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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8043L16.5.5
        

               
Conread position:
               
134-713
               

               
Cow position:
               
chr3:32366735-32367313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 43
               

               
Conread position:
               
411-766
               

               
Cow position:
               
chr3:69207477-69207124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
414-696
               

               
Cow position:
               
chr3:71229320-71229042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
414-803
               

               
Cow position:
               
chr3:24905724-24906116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
422-690
               

               
Cow position:
               
chr3:41479142-41479406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
428-706
               

               
Cow position:
               
chr3:66859439-66859713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
429-703
               

               
Cow position:
               
chr3:79622756-79622484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
434-803
               

               
Cow position:
               
chr3:44445101-44444721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
441-762
               

               
Cow position:
               
chr3:31322155-31322473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
443-800
               

               
Cow position:
               
chr3:56493820-56493463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
443-802
               

               
Cow position:
               
chr3:56203066-56202705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
443-806
               

               
Cow position:
               
chr3:31814925-31814553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
444-612
               

               
Cow position:
               
chr3:72058135-72058303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
444-617
               

               
Cow position:
               
chr3:57464666-57464838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
444-620
               

               
Cow position:
               
chr3:22882371-22882202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
444-620
               

               
Cow position:
               
chr3:62912272-62912092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
444-626
               

               
Cow position:
               
chr3:24763635-24763453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
444-626
               

               
Cow position:
               
chr3:43316422-43316243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-647
               

               
Cow position:
               
chr3:47686565-47686375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-657
               

               
Cow position:
               
chr3:16851271-16851495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
444-660
               

               
Cow position:
               
chr3:40774428-40774648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-660
               

               
Cow position:
               
chr3:56914720-56914932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
444-661
               

               
Cow position:
               
chr3:13684379-13684592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
444-670
               

               
Cow position:
               
chr3:68331340-68331126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-675
               

               
Cow position:
               
chr3:40979528-40979757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
444-682
               

               
Cow position:
               
chr3:16883506-16883265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
444-685
               

               
Cow position:
               
chr3:40737742-40737495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
444-687
               

               
Cow position:
               
chr3:17321584-17321821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
444-687
               

               
Cow position:
               
chr3:55387025-55387263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
444-688
               

               
Cow position:
               
chr3:61701617-61701373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
444-690
               

               
Cow position:
               
chr3:15743435-15743188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
444-690
               

               
Cow position:
               
chr3:69510703-69510463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
444-696
               

               
Cow position:
               
chr3:21062447-21062702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 183
               

               
Conread position:
               
444-698
               

               
Cow position:
               
chr3:34684-34920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
444-701
               

               
Cow position:
               
chr3:43483629-43483891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
444-702
               

               
Cow position:
               
chr3:76901867-76902121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-706
               

               
Cow position:
               
chr3:69055875-69056138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-706
               

               
Cow position:
               
chr3:72615133-72615394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
444-706
               

               
Cow position:
               
chr3:73732406-73732148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-708
               

               
Cow position:
               
chr3:25264744-25264481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
444-713
               

               
Cow position:
               
chr3:27223861-27224130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
444-715
               

               
Cow position:
               
chr3:68682320-68682046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
444-718
               

               
Cow position:
               
chr3:55985343-55985617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
444-719
               

               
Cow position:
               
chr3:55728107-55728375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
444-722
               

               
Cow position:
               
chr3:53159210-53159493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 99
               

               
Conread position:
               
444-724
               

               
Cow position:
               
chr3:72913893-72914163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
444-751
               

               
Cow position:
               
chr3:59822398-59822093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-754
               

               
Cow position:
               
chr3:16614488-16614785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
444-757
               

               
Cow position:
               
chr3:56375974-56376293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
444-758
               

               
Cow position:
               
chr3:45677555-45677872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
444-761
               

               
Cow position:
               
chr3:20453140-20453447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
444-762
               

               
Cow position:
               
chr3:15545141-15544822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-762
               

               
Cow position:
               
chr3:64012892-64013212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
444-770
               

               
Cow position:
               
chr3:41583144-41583444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
240, 10
               

               
Conread position:
               
444-775
               

               
Cow position:
               
chr3:73036922-73036595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
444-791
               

               
Cow position:
               
chr3:62911024-62910647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
11, 310
               

               
Conread position:
               
444-792
               

               
Cow position:
               
chr3:22946181-22945829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-794
               

               
Cow position:
               
chr3:17885358-17885710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-795
               

               
Cow position:
               
chr3:61955958-61956306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
444-795
               

               
Cow position:
               
chr3:64036057-64036424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
444-797
               

               
Cow position:
               
chr3:26747062-26746714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chr3:41854748-41854412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chr3:65922548-65922905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:4344265-4344624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:8987829-8988193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:16015835-16016189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:23229933-23229566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:24796034-24796384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:27090376-27090023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
253, 22
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:44393735-44394100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:70839578-70839935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:73399129-73399485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:73598416-73598064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chr3:80594919-80595276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
444-803
               

               
Cow position:
               
chr3:8044535-8044186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
444-803
               

               
Cow position:
               
chr3:18595694-18596057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
444-826
               

               
Cow position:
               
chr3:77624041-77624426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
444-827
               

               
Cow position:
               
chr3:69496095-69495715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
444-835
               

               
Cow position:
               
chr3:50731384-50731776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
444-835
               

               
Cow position:
               
chr3:71260849-71260470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-842
               

               
Cow position:
               
chr3:69590447-69590052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
444-845
               

               
Cow position:
               
chr3:2274076-2274474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
444-857
               

               
Cow position:
               
chr3:38018027-38017610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
444-857
               

               
Cow position:
               
chr3:54015153-54014739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
445-623
               

               
Cow position:
               
chr3:13469961-13469785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
445-696
               

               
Cow position:
               
chr3:29238865-29238623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
445-698
               

               
Cow position:
               
chr3:70371032-70370786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
445-767
               

               
Cow position:
               
chr3:8497075-8496750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
445-767
               

               
Cow position:
               
chr3:76355297-76355609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
445-833
               

               
Cow position:
               
chr3:8191013-8191395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
445-835
               

               
Cow position:
               
chr3:22044075-22043683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
446-630
               

               
Cow position:
               
chr3:31226940-31227118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
446-652
               

               
Cow position:
               
chr3:45301207-45301403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
446-692
               

               
Cow position:
               
chr3:18060839-18061069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
446-703
               

               
Cow position:
               
chr3:37031500-37031764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
446-750
               

               
Cow position:
               
chr3:16836853-16836553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
446-805
               

               
Cow position:
               
chr3:20576582-20576241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
446-840
               

               
Cow position:
               
chr3:32344118-32343710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
447-755
               

               
Cow position:
               
chr3:58105113-58105420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
447-769
               

               
Cow position:
               
chr3:43091716-43092033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
447-787
               

               
Cow position:
               
chr3:60421779-60422124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
448-632
               

               
Cow position:
               
chr3:11532653-11532838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
448-671
               

               
Cow position:
               
chr3:476701-476489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
448-692
               

               
Cow position:
               
chr3:23920962-23920727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
448-701
               

               
Cow position:
               
chr3:60618303-60618545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
448-795
               

               
Cow position:
               
chr3:7650828-7651176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
448-800
               

               
Cow position:
               
chr3:7739361-7739030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
6, 35
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chr3:26255638-26255283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
6, 29
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chr3:68379455-68379834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chr3:70701674-70702027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chr3:76266973-76266622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 38
               

               
Conread position:
               
448-808
               

               
Cow position:
               
chr3:7984261-7983898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
6, 41
               

               
Conread position:
               
448-819
               

               
Cow position:
               
chr3:1256736-1257100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
448-835
               

               
Cow position:
               
chr3:4080189-4079807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
448-835
               

               
Cow position:
               
chr3:43419758-43420158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
448-840
               

               
Cow position:
               
chr3:8002224-8001837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 45
               

               
Conread position:
               
449-695
               

               
Cow position:
               
chr3:67625866-67625616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
449-703
               

               
Cow position:
               
chr3:61342067-61341810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr3:764254-764515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
450-802
               

               
Cow position:
               
chr3:8563257-8562928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
244, 36
               

               
Conread position:
               
451-657
               

               
Cow position:
               
chr3:58686943-58686737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
451-713
               

               
Cow position:
               
chr3:26615606-26615345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
451-756
               

               
Cow position:
               
chr3:24909841-24910145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
451-802
               

               
Cow position:
               
chr3:81552118-81551759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
451-878
               

               
Cow position:
               
chr3:57877016-57877416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
452-658
               

               
Cow position:
               
chr3:10932981-10933181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
452-659
               

               
Cow position:
               
chr3:63008088-63007880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
452-670
               

               
Cow position:
               
chr3:39234516-39234724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
452-675
               

               
Cow position:
               
chr3:20395746-20395525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
452-688
               

               
Cow position:
               
chr3:4164886-4164652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
452-688
               

               
Cow position:
               
chr3:43231824-43232058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
452-690
               

               
Cow position:
               
chr3:7543763-7544003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
452-691
               

               
Cow position:
               
chr3:80452902-80452671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
452-694
               

               
Cow position:
               
chr3:27524012-27523780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
91, 33
               

               
Conread position:
               
452-706
               

               
Cow position:
               
chr3:65203773-65203516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
452-707
               

               
Cow position:
               
chr3:39225431-39225185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
452-710
               

               
Cow position:
               
chr3:52424032-52424285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr3:80858632-80858894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
185, 27
               

               
Conread position:
               
452-762
               

               
Cow position:
               
chr3:74763101-74763392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
452-770
               

               
Cow position:
               
chr3:58764787-58764457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
452-792
               

               
Cow position:
               
chr3:31991403-31991072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
452-794
               

               
Cow position:
               
chr3:57594770-57595120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
452-799
               

               
Cow position:
               
chr3:32166318-32166685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
452-800
               

               
Cow position:
               
chr3:10679553-10679905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
452-802
               

               
Cow position:
               
chr3:9993843-9993504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
452-802
               

               
Cow position:
               
chr3:11570321-11570660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
452-822
               

               
Cow position:
               
chr3:14521138-14521505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
453-802
               

               
Cow position:
               
chr3:18394315-18393965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
454-671
               

               
Cow position:
               
chr3:25583869-25583656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
454-683
               

               
Cow position:
               
chr3:46809116-46809339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
454-687
               

               
Cow position:
               
chr3:39197561-39197332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 22
               

               
Conread position:
               
454-695
               

               
Cow position:
               
chr3:20224349-20224105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
454-707
               

               
Cow position:
               
chr3:39861635-39861383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
454-802
               

               
Cow position:
               
chr3:19413515-19413860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
183, 71
               

               
Conread position:
               
454-802
               

               
Cow position:
               
chr3:58715771-58715411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
454-802
               

               
Cow position:
               
chr3:63227295-63227651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
454-802
               

               
Cow position:
               
chr3:70200715-70201065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
454-802
               

               
Cow position:
               
chr3:76157418-76157766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
454-807
               

               
Cow position:
               
chr3:11651758-11652114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
454-867
               

               
Cow position:
               
chr3:74867615-74868043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
455-626
               

               
Cow position:
               
chr3:68357687-68357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
455-633
               

               
Cow position:
               
chr3:74144689-74144517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
455-690
               

               
Cow position:
               
chr3:31991836-31991604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
455-692
               

               
Cow position:
               
chr3:62820581-62820815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
455-697
               

               
Cow position:
               
chr3:41882643-41882881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
92, 131
               

               
Conread position:
               
455-698
               

               
Cow position:
               
chr3:59668456-59668692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
238, 34
               

               
Conread position:
               
455-703
               

               
Cow position:
               
chr3:43245821-43245570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
455-708
               

               
Cow position:
               
chr3:58238664-58238917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
455-710
               

               
Cow position:
               
chr3:78242027-78242281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
455-715
               

               
Cow position:
               
chr3:45704999-45705256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
455-762
               

               
Cow position:
               
chr3:21035789-21035485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
455-762
               

               
Cow position:
               
chr3:60278736-60278434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
455-786
               

               
Cow position:
               
chr3:56575965-56575630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
455-792
               

               
Cow position:
               
chr3:29151518-29151181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
455-792
               

               
Cow position:
               
chr3:44421811-44422142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
455-794
               

               
Cow position:
               
chr3:62784894-62784554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
455-795
               

               
Cow position:
               
chr3:62343763-62343422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
455-797
               

               
Cow position:
               
chr3:47680482-47680147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 25
               

               
Conread position:
               
455-842
               

               
Cow position:
               
chr3:64181068-64180680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
455-843
               

               
Cow position:
               
chr3:28191949-28191556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
456-625
               

               
Cow position:
               
chr3:45740461-45740623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
456-644
               

               
Cow position:
               
chr3:68243419-68243239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
456-675
               

               
Cow position:
               
chr3:24657583-24657375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
456-694
               

               
Cow position:
               
chr3:31779379-31779614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
456-696
               

               
Cow position:
               
chr3:72377076-72377311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
456-710
               

               
Cow position:
               
chr3:42876770-42876518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
456-714
               

               
Cow position:
               
chr3:59270867-59270613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
456-802
               

               
Cow position:
               
chr3:10056023-10056373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
456-802
               

               
Cow position:
               
chr3:70353725-70353378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
456-802
               

               
Cow position:
               
chr3:76976455-76976808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
456-820
               

               
Cow position:
               
chr3:73420967-73420611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
456-835
               

               
Cow position:
               
chr3:77745940-77746301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
456-839
               

               
Cow position:
               
chr3:13451427-13451795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
456-843
               

               
Cow position:
               
chr3:65569205-65569573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
457-696
               

               
Cow position:
               
chr3:71511963-71511727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
457-697
               

               
Cow position:
               
chr3:48997896-48998134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
457-791
               

               
Cow position:
               
chr3:15658179-15658506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
457-795
               

               
Cow position:
               
chr3:54951795-54952129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
457-795
               

               
Cow position:
               
chr3:55130199-55130545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 179
               

               
Conread position:
               
457-802
               

               
Cow position:
               
chr3:52042678-52043028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
457-802
               

               
Cow position:
               
chr3:72798330-72797986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
457-855
               

               
Cow position:
               
chr3:8456851-8456458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
457-867
               

               
Cow position:
               
chr3:70095306-70094893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
458-658
               

               
Cow position:
               
chr3:70254303-70254108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
459-656
               

               
Cow position:
               
chr3:56154126-56154326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
459-713
               

               
Cow position:
               
chr3:61183318-61183569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
459-792
               

               
Cow position:
               
chr3:58256140-58256476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
459-796
               

               
Cow position:
               
chr3:51478562-51478873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
236, 25
               

               
Conread position:
               
459-802
               

               
Cow position:
               
chr3:32607721-32608058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
460-632
               

               
Cow position:
               
chr3:41655384-41655562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
460-681
               

               
Cow position:
               
chr3:13902475-13902688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
460-687
               

               
Cow position:
               
chr3:16789983-16790213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
460-848
               

               
Cow position:
               
chr3:36145649-36145257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
461-798
               

               
Cow position:
               
chr3:45929604-45929926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
461-835
               

               
Cow position:
               
chr3:69906897-69906528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
463-632
               

               
Cow position:
               
chr3:17229945-17230113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
463-694
               

               
Cow position:
               
chr3:43045752-43045976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
463-802
               

               
Cow position:
               
chr3:30192593-30192245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
464-647
               

               
Cow position:
               
chr3:64084133-64084313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
464-668
               

               
Cow position:
               
chr3:41914218-41914021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
464-678
               

               
Cow position:
               
chr3:27667446-27667651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
464-724
               

               
Cow position:
               
chr3:84195-83944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
466-730
               

               
Cow position:
               
chr3:74755505-74755762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
471-795
               

               
Cow position:
               
chr3:14927482-14927794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
479-858
               

               
Cow position:
               
chr3:3309349-3309733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
482-691
               

               
Cow position:
               
chr3:61283185-61283391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
482-761
               

               
Cow position:
               
chr3:77328717-77328441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
482-762
               

               
Cow position:
               
chr3:21542866-21542579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
482-795
               

               
Cow position:
               
chr3:15306662-15306964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
483-694
               

               
Cow position:
               
chr3:80414020-80413814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
483-706
               

               
Cow position:
               
chr3:26305041-26305263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
484-774
               

               
Cow position:
               
chr3:40215185-40215483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 269
               

               
Conread position:
               
484-795
               

               
Cow position:
               
chr3:14747426-14747095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 245
               

               
Conread position:
               
485-708
               

               
Cow position:
               
chr3:78783875-78784090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
171, 9
               

               
Conread position:
               
485-715
               

               
Cow position:
               
chr3:72122103-72121869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
486-675
               

               
Cow position:
               
chr3:18242953-18242757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 93
               

               
Conread position:
               
486-719
               

               
Cow position:
               
chr3:57591187-57591425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
486-752
               

               
Cow position:
               
chr3:4652061-4652326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
241, 53
               

               
Conread position:
               
486-795
               

               
Cow position:
               
chr3:77117885-77118198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 286
               

               
Conread position:
               
486-796
               

               
Cow position:
               
chr3:59390078-59389751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
486-797
               

               
Cow position:
               
chr3:653565-653251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
171, 48
               

               
Conread position:
               
486-799
               

               
Cow position:
               
chr3:42733490-42733807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
486-800
               

               
Cow position:
               
chr3:53568670-53568985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 95
               

               
Conread position:
               
486-818
               

               
Cow position:
               
chr3:70113441-70113099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 172
               

               
Conread position:
               
486-820
               

               
Cow position:
               
chr3:73053132-73052779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
486-842
               

               
Cow position:
               
chr3:73626193-73625828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
487-796
               

               
Cow position:
               
chr3:11553152-11553465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
487-796
               

               
Cow position:
               
chr3:23782471-23782155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 233
               

               
Conread position:
               
487-841
               

               
Cow position:
               
chr3:35260354-35260700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
487-871
               

               
Cow position:
               
chr3:77454301-77454685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
488-674
               

               
Cow position:
               
chr3:27524800-27524609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
488-705
               

               
Cow position:
               
chr3:81561642-81561426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
489-627
               

               
Cow position:
               
chr3:65403001-65402860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
489-791
               

               
Cow position:
               
chr3:62806970-62806680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
198, 7
               

               
Conread position:
               
489-792
               

               
Cow position:
               
chr3:74084340-74084644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
489-797
               

               
Cow position:
               
chr3:77613604-77613291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
489-802
               

               
Cow position:
               
chr3:39940339-39940638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
490-683
               

               
Cow position:
               
chr3:53923802-53923607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
490-689
               

               
Cow position:
               
chr3:17847036-17846836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
57, 81
               

               
Conread position:
               
490-715
               

               
Cow position:
               
chr3:72539774-72539543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
490-716
               

               
Cow position:
               
chr3:27274961-27274735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
490-792
               

               
Cow position:
               
chr3:82187204-82186898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 109
               

               
Conread position:
               
490-803
               

               
Cow position:
               
chr3:50587279-50587586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 40
               

               
Conread position:
               
491-708
               

               
Cow position:
               
chr3:32588078-32588292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
491-799
               

               
Cow position:
               
chr3:61609896-61609584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
491-835
               

               
Cow position:
               
chr3:72262176-72262530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
491-841
               

               
Cow position:
               
chr3:55188434-55188092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
491-841
               

               
Cow position:
               
chr3:58024896-58024522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 120
               

               
Conread position:
               
492-686
               

               
Cow position:
               
chr3:19043136-19042941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
492-691
               

               
Cow position:
               
chr3:75791022-75790822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
492-802
               

               
Cow position:
               
chr3:54898022-54898333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
492-835
               

               
Cow position:
               
chr3:76236851-76237193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
493-707
               

               
Cow position:
               
chr3:83451874-83452090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 171
               

               
Conread position:
               
493-796
               

               
Cow position:
               
chr3:29105444-29105127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
494-682
               

               
Cow position:
               
chr3:24677896-24677706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
494-710
               

               
Cow position:
               
chr3:67002277-67002061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
494-802
               

               
Cow position:
               
chr3:52845111-52845428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 201
               

               
Conread position:
               
494-802
               

               
Cow position:
               
chr3:60171288-60170965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
494-803
               

               
Cow position:
               
chr3:9589581-9589259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
494-803
               

               
Cow position:
               
chr3:69923444-69923139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 165
               

               
Conread position:
               
494-810
               

               
Cow position:
               
chr3:11660599-11660923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 216
               

               
Conread position:
               
495-796
               

               
Cow position:
               
chr3:39132924-39132637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
190, 38
               

               
Conread position:
               
495-802
               

               
Cow position:
               
chr3:4465476-4465166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
202, 30
               

               
Conread position:
               
495-802
               

               
Cow position:
               
chr3:38739114-38739434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 251
               

               
Conread position:
               
496-664
               

               
Cow position:
               
chr3:77535988-77536159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
496-882
               

               
Cow position:
               
chr3:38003945-38004341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
497-685
               

               
Cow position:
               
chr3:8098998-8099188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
499-792
               

               
Cow position:
               
chr3:54596958-54597257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
499-793
               

               
Cow position:
               
chr3:33330073-33330370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
499-841
               

               
Cow position:
               
chr3:61884501-61884860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
500-754
               

               
Cow position:
               
chr3:35882073-35882334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
502-685
               

               
Cow position:
               
chr3:23171207-23171392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
503-795
               

               
Cow position:
               
chr3:43649206-43649503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 201
               

               
Conread position:
               
503-795
               

               
Cow position:
               
chr3:61836680-61836377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
504-661
               

               
Cow position:
               
chr3:25871602-25871444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
504-691
               

               
Cow position:
               
chr3:963821-963629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
504-795
               

               
Cow position:
               
chr3:27667157-27667455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
504-800
               

               
Cow position:
               
chr3:40896334-40896639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
508-866
               

               
Cow position:
               
chr3:78144517-78144868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
509-795
               

               
Cow position:
               
chr3:7948588-7948297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
511-658
               

               
Cow position:
               
chr3:25822318-25822167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
511-697
               

               
Cow position:
               
chr3:84976831-84976639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
511-800
               

               
Cow position:
               
chr3:53645369-53645079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
511-800
               

               
Cow position:
               
chr3:64404058-64403775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
511-802
               

               
Cow position:
               
chr3:80563360-80563078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
512-668
               

               
Cow position:
               
chr3:80362488-80362647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
515-760
               

               
Cow position:
               
chr3:70697679-70697428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
515-792
               

               
Cow position:
               
chr3:76836527-76836813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
515-802
               

               
Cow position:
               
chr3:12756745-12757037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
515-802
               

               
Cow position:
               
chr3:84602771-84602485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
515-803
               

               
Cow position:
               
chr3:16882401-16882104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
515-835
               

               
Cow position:
               
chr3:39419266-39419593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
516-761
               

               
Cow position:
               
chr3:35587098-35587349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
516-762
               

               
Cow position:
               
chr3:64300151-64299907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
517-689
               

               
Cow position:
               
chr3:33503311-33503139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
517-795
               

               
Cow position:
               
chr3:62075291-62075571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 103
               

               
Conread position:
               
519-787
               

               
Cow position:
               
chr3:46082191-46082469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
521-637
               

               
Cow position:
               
chr3:52637961-52638080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
521-802
               

               
Cow position:
               
chr3:27214056-27214336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
521-835
               

               
Cow position:
               
chr3:10441272-10441602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
521-848
               

               
Cow position:
               
chr3:4460800-4461134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
522-795
               

               
Cow position:
               
chr3:75655964-75655685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
523-690
               

               
Cow position:
               
chr3:21867130-21867295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
533-733
               

               
Cow position:
               
chr3:67558175-67557976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
534-802
               

               
Cow position:
               
chr3:199244-199513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 99
               

               
Conread position:
               
534-835
               

               
Cow position:
               
chr3:77061185-77060902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
230, 13
               

               
Conread position:
               
535-801
               

               
Cow position:
               
chr3:63248746-63249015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
539-801
               

               
Cow position:
               
chr3:36000565-36000818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
232, 10
               

               
Conread position:
               
540-690
               

               
Cow position:
               
chr3:68503458-68503311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
541-820
               

               
Cow position:
               
chr3:30194617-30194899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
152, 205
               

               
Conread position:
               
541-840
               

               
Cow position:
               
chr3:16273131-16272820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
172, 92
               

               
Conread position:
               
542-790
               

               
Cow position:
               
chr3:65742863-65742615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
543-687
               

               
Cow position:
               
chr3:9290662-9290803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
543-758
               

               
Cow position:
               
chr3:80627052-80626834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
543-772
               

               
Cow position:
               
chr3:8451063-8450835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
144, 13
               

               
Conread position:
               
543-802
               

               
Cow position:
               
chr3:12275756-12276010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
221, 21
               

               
Conread position:
               
544-715
               

               
Cow position:
               
chr3:53509389-53509220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
136, 149
               

               
Conread position:
               
544-761
               

               
Cow position:
               
chr3:53942338-53942116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
545-795
               

               
Cow position:
               
chr3:49160423-49160167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
141, 115
               

               
Conread position:
               
545-796
               

               
Cow position:
               
chr3:19470559-19470798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
207, 26
               

               
Conread position:
               
545-802
               

               
Cow position:
               
chr3:41304195-41304458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
160, 208
               

               
Conread position:
               
545-802
               

               
Cow position:
               
chr3:62992080-62992346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
144, 136
               

               
Conread position:
               
546-823
               

               
Cow position:
               
chr3:83868730-83869013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
168, 150
               

               
Conread position:
               
548-770
               

               
Cow position:
               
chr3:74394851-74394640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
216, 58
               

               
Conread position:
               
548-802
               

               
Cow position:
               
chr3:69714800-69715066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 160
               

               
Conread position:
               
550-835
               

               
Cow position:
               
chr3:5606417-5606708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
139, 94
               

               
Conread position:
               
551-715
               

               
Cow position:
               
chr3:3923839-3923678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
552-791
               

               
Cow position:
               
chr3:80153611-80153864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
552-802
               

               
Cow position:
               
chr3:56206829-56207078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
167, 81
               

               
Conread position:
               
553-800
               

               
Cow position:
               
chr3:2356920-2357161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 54
               

               
Conread position:
               
556-802
               

               
Cow position:
               
chr3:61606641-61606892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
558-800
               

               
Cow position:
               
chr3:31793694-31793449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
132, 9
               

               
Conread position:
               
559-841
               

               
Cow position:
               
chr3:47617581-47617288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
567-720
               

               
Cow position:
               
chr3:15999272-15999423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
120, 88
               

               
Conread position:
               
567-796
               

               
Cow position:
               
chr3:2295644-2295865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
160, 82
               

               
Conread position:
               
567-805
               

               
Cow position:
               
chr3:35371815-35372059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
121, 179
               

               
Conread position:
               
577-796
               

               
Cow position:
               
chr3:4155045-4154819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
110, 176
               

               
Conread position:
               
577-802
               

               
Cow position:
               
chr3:13029923-13030151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
577-802
               

               
Cow position:
               
chr3:41931104-41931328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
581-802
               

               
Cow position:
               
chr3:42435024-42434792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
582-802
               

               
Cow position:
               
chr3:63357381-63357152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
109, 176
               

               
Conread position:
               
582-845
               

               
Cow position:
               
chr3:74131511-74131233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 155
               

               
Conread position:
               
592-859
               

               
Cow position:
               
chr3:6901118-6901382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
605-850
               

               
Cow position:
               
chr3:52515106-52515360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
88, 48
               
Show alignments to all cow chromosomes.