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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8043L16.5.5
        

               
Conread position:
               
1-936
               

               
Cow position:
               
chrX:2256542-2255612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
967
               

               
Alignm identity:
               
819
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 104
               

               
Conread position:
               
379-655
               

               
Cow position:
               
chrX:36294789-36295063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
396-690
               

               
Cow position:
               
chrX:8102966-8102673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
419-844
               

               
Cow position:
               
chrX:11713595-11713161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
425-795
               

               
Cow position:
               
chrX:22136550-22136184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
428-644
               

               
Cow position:
               
chrX:12865718-12865933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
430-654
               

               
Cow position:
               
chrX:9439234-9439454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
433-804
               

               
Cow position:
               
chrX:4302620-4303003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
436-795
               

               
Cow position:
               
chrX:33837301-33837657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
437-683
               

               
Cow position:
               
chrX:15134648-15134405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
442-802
               

               
Cow position:
               
chrX:16060508-16060152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
443-696
               

               
Cow position:
               
chrX:22963107-22962858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
443-802
               

               
Cow position:
               
chrX:23192652-23192285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
444-586
               

               
Cow position:
               
chrX:6646585-6646726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
444-595
               

               
Cow position:
               
chrX:34376680-34376829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
444-614
               

               
Cow position:
               
chrX:19162909-19162741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
444-620
               

               
Cow position:
               
chrX:40322639-40322815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
444-626
               

               
Cow position:
               
chrX:41049836-41050020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
444-631
               

               
Cow position:
               
chrX:14618528-14618718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
444-631
               

               
Cow position:
               
chrX:19847261-19847073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
444-643
               

               
Cow position:
               
chrX:37148258-37148454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
444-653
               

               
Cow position:
               
chrX:29010456-29010663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-656
               

               
Cow position:
               
chrX:25840834-25841042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
444-667
               

               
Cow position:
               
chrX:11108404-11108189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-671
               

               
Cow position:
               
chrX:15154716-15154934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-683
               

               
Cow position:
               
chrX:31932399-31932164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
444-685
               

               
Cow position:
               
chrX:16345645-16345885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-686
               

               
Cow position:
               
chrX:27647370-27647599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
444-689
               

               
Cow position:
               
chrX:25924814-25924569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
444-694
               

               
Cow position:
               
chrX:28855225-28855464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
444-698
               

               
Cow position:
               
chrX:19918872-19918619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
444-699
               

               
Cow position:
               
chrX:12110933-12110677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
444-701
               

               
Cow position:
               
chrX:15988112-15987858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
444-703
               

               
Cow position:
               
chrX:41380346-41380108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
444-703
               

               
Cow position:
               
chrX:41780676-41780438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
444-704
               

               
Cow position:
               
chrX:5454986-5454731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
444-705
               

               
Cow position:
               
chrX:23831723-23831471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
444-705
               

               
Cow position:
               
chrX:39569494-39569217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 213
               

               
Conread position:
               
444-711
               

               
Cow position:
               
chrX:5909774-5909509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-715
               

               
Cow position:
               
chrX:28765820-28765549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
444-717
               

               
Cow position:
               
chrX:27950104-27950375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
444-717
               

               
Cow position:
               
chrX:37405684-37405953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
444-726
               

               
Cow position:
               
chrX:1655203-1655486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-727
               

               
Cow position:
               
chrX:20970647-20970929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
444-749
               

               
Cow position:
               
chrX:8703252-8702946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
444-752
               

               
Cow position:
               
chrX:117507-117200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
444-752
               

               
Cow position:
               
chrX:26878390-26878700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
444-757
               

               
Cow position:
               
chrX:12852786-12852471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
444-757
               

               
Cow position:
               
chrX:24006099-24005798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
444-770
               

               
Cow position:
               
chrX:46055327-46055657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
444-772
               

               
Cow position:
               
chrX:11892891-11893221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
444-792
               

               
Cow position:
               
chrX:17282266-17281915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
444-792
               

               
Cow position:
               
chrX:20710917-20711256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
444-792
               

               
Cow position:
               
chrX:23927449-23927095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
444-793
               

               
Cow position:
               
chrX:42540327-42540672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-795
               

               
Cow position:
               
chrX:67743-68101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
444-795
               

               
Cow position:
               
chrX:15304602-15304234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
444-795
               

               
Cow position:
               
chrX:28864040-28863697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
444-795
               

               
Cow position:
               
chrX:29024172-29024529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chrX:2656773-2657123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chrX:4664894-4664524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chrX:12021997-12022350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chrX:40549347-40549692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chrX:41232089-41232449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
444-796
               

               
Cow position:
               
chrX:42141904-42141561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
444-797
               

               
Cow position:
               
chrX:11858112-11857758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
444-797
               

               
Cow position:
               
chrX:19741780-19741437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
444-798
               

               
Cow position:
               
chrX:20590702-20591067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chrX:18896693-18896340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
444-800
               

               
Cow position:
               
chrX:23514748-23514397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
444-801
               

               
Cow position:
               
chrX:19807446-19807800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:304917-305279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:5507399-5507761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:11914278-11914642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:12102325-12101965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:14120655-14120305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:20335582-20335227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:23081016-23081372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:29160545-29160905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:33003979-33004341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:39288445-39288084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:41818690-41818339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
444-802
               

               
Cow position:
               
chrX:47290757-47290385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
444-810
               

               
Cow position:
               
chrX:1394340-1394708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
444-818
               

               
Cow position:
               
chrX:11373283-11372911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
444-821
               

               
Cow position:
               
chrX:529527-529889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
444-826
               

               
Cow position:
               
chrX:31839232-31839627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
444-835
               

               
Cow position:
               
chrX:873669-874067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
444-841
               

               
Cow position:
               
chrX:17969125-17968728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
444-843
               

               
Cow position:
               
chrX:508433-508025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
444-844
               

               
Cow position:
               
chrX:42262827-42262424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
444-858
               

               
Cow position:
               
chrX:42906842-42907264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
444-863
               

               
Cow position:
               
chrX:18769624-18770044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
444-864
               

               
Cow position:
               
chrX:23238222-23238651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
444-877
               

               
Cow position:
               
chrX:18459734-18459291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
445-625
               

               
Cow position:
               
chrX:42084733-42084911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
445-688
               

               
Cow position:
               
chrX:20446435-20446191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
445-692
               

               
Cow position:
               
chrX:15308274-15308029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
445-762
               

               
Cow position:
               
chrX:5111690-5111374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
445-796
               

               
Cow position:
               
chrX:22076198-22075839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
445-796
               

               
Cow position:
               
chrX:41757728-41757375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
445-798
               

               
Cow position:
               
chrX:19649535-19649181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
445-802
               

               
Cow position:
               
chrX:2247608-2247235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
445-802
               

               
Cow position:
               
chrX:2790964-2791321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
445-802
               

               
Cow position:
               
chrX:41919610-41919953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
445-837
               

               
Cow position:
               
chrX:19657157-19656755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
446-792
               

               
Cow position:
               
chrX:34435324-34434973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
446-793
               

               
Cow position:
               
chrX:23876393-23876035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
446-802
               

               
Cow position:
               
chrX:2374346-2374703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
448-622
               

               
Cow position:
               
chrX:17082679-17082506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 27
               

               
Conread position:
               
448-641
               

               
Cow position:
               
chrX:40105959-40105772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
448-705
               

               
Cow position:
               
chrX:24888405-24888152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
448-715
               

               
Cow position:
               
chrX:31955517-31955241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
448-787
               

               
Cow position:
               
chrX:40253906-40254243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
448-798
               

               
Cow position:
               
chrX:42044241-42043887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 37
               

               
Conread position:
               
448-800
               

               
Cow position:
               
chrX:11904598-11904243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
448-800
               

               
Cow position:
               
chrX:19540621-19540269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chrX:33672488-33672846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
448-802
               

               
Cow position:
               
chrX:38391092-38390739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 29
               

               
Conread position:
               
448-835
               

               
Cow position:
               
chrX:27135604-27135197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
449-704
               

               
Cow position:
               
chrX:8109057-8109312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
449-712
               

               
Cow position:
               
chrX:42926350-42926081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
5, 35
               

               
Conread position:
               
451-680
               

               
Cow position:
               
chrX:9346872-9347099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 38
               

               
Conread position:
               
451-689
               

               
Cow position:
               
chrX:27210542-27210773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
451-757
               

               
Cow position:
               
chrX:37105901-37106219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
451-802
               

               
Cow position:
               
chrX:39236751-39237087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
313, 31
               

               
Conread position:
               
452-596
               

               
Cow position:
               
chrX:41106277-41106134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
452-629
               

               
Cow position:
               
chrX:20591269-20591445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
452-647
               

               
Cow position:
               
chrX:19596005-19596195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
452-661
               

               
Cow position:
               
chrX:11917117-11917320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
452-661
               

               
Cow position:
               
chrX:44228241-44228039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
452-664
               

               
Cow position:
               
chrX:13885693-13885904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
452-668
               

               
Cow position:
               
chrX:29585777-29585987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
452-690
               

               
Cow position:
               
chrX:25362127-25362356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
452-701
               

               
Cow position:
               
chrX:30085531-30085284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
452-762
               

               
Cow position:
               
chrX:31777705-31777389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
452-787
               

               
Cow position:
               
chrX:20445466-20445133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
452-794
               

               
Cow position:
               
chrX:19509712-19510076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
452-797
               

               
Cow position:
               
chrX:25150927-25151266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
452-801
               

               
Cow position:
               
chrX:27240468-27240816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
452-802
               

               
Cow position:
               
chrX:27419250-27418902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
452-802
               

               
Cow position:
               
chrX:39187635-39187278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
452-808
               

               
Cow position:
               
chrX:33172226-33171867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
452-880
               

               
Cow position:
               
chrX:26288951-26288519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
453-696
               

               
Cow position:
               
chrX:17984898-17984657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
453-796
               

               
Cow position:
               
chrX:11314802-11315148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
453-802
               

               
Cow position:
               
chrX:11385255-11384905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
453-841
               

               
Cow position:
               
chrX:4420920-4421304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
454-660
               

               
Cow position:
               
chrX:47878208-47878413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
454-758
               

               
Cow position:
               
chrX:27105152-27104869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
454-759
               

               
Cow position:
               
chrX:31785160-31785462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
454-773
               

               
Cow position:
               
chrX:28666236-28665924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
454-788
               

               
Cow position:
               
chrX:31460567-31460891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
454-800
               

               
Cow position:
               
chrX:4431427-4431754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
181, 30
               

               
Conread position:
               
455-606
               

               
Cow position:
               
chrX:6494601-6494454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
455-620
               

               
Cow position:
               
chrX:25738793-25738957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
455-626
               

               
Cow position:
               
chrX:11763948-11763779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
455-683
               

               
Cow position:
               
chrX:4566191-4565966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
455-692
               

               
Cow position:
               
chrX:9403846-9404087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 176
               

               
Conread position:
               
455-692
               

               
Cow position:
               
chrX:26845247-26845488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
455-701
               

               
Cow position:
               
chrX:13363742-13363494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
455-703
               

               
Cow position:
               
chrX:19636645-19636889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
455-715
               

               
Cow position:
               
chrX:7103623-7103876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
455-763
               

               
Cow position:
               
chrX:37231395-37231707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
455-792
               

               
Cow position:
               
chrX:7108654-7108989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
455-795
               

               
Cow position:
               
chrX:29871709-29871364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
455-795
               

               
Cow position:
               
chrX:43997449-43997801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
455-802
               

               
Cow position:
               
chrX:23484928-23485268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
455-840
               

               
Cow position:
               
chrX:23819490-23819110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
258, 25
               

               
Conread position:
               
456-685
               

               
Cow position:
               
chrX:41701657-41701884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
456-687
               

               
Cow position:
               
chrX:23312120-23311887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
456-693
               

               
Cow position:
               
chrX:7809267-7809030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
456-697
               

               
Cow position:
               
chrX:4629955-4629705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
456-700
               

               
Cow position:
               
chrX:7390043-7389802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
456-703
               

               
Cow position:
               
chrX:37576052-37576294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
456-711
               

               
Cow position:
               
chrX:12173221-12172967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
456-711
               

               
Cow position:
               
chrX:31260319-31260067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
456-720
               

               
Cow position:
               
chrX:21217854-21217591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
224, 38
               

               
Conread position:
               
456-734
               

               
Cow position:
               
chrX:43702275-43702000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
456-761
               

               
Cow position:
               
chrX:27768566-27768259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
456-797
               

               
Cow position:
               
chrX:389236-389582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
456-802
               

               
Cow position:
               
chrX:23268450-23268106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
457-613
               

               
Cow position:
               
chrX:43006880-43006725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 24
               

               
Conread position:
               
457-690
               

               
Cow position:
               
chrX:4959366-4959135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
457-690
               

               
Cow position:
               
chrX:30151856-30151627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
457-757
               

               
Cow position:
               
chrX:44147359-44147053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
457-797
               

               
Cow position:
               
chrX:165628-165969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
457-802
               

               
Cow position:
               
chrX:37453899-37454245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
458-657
               

               
Cow position:
               
chrX:6641357-6641160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
459-620
               

               
Cow position:
               
chrX:46079668-46079832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
459-660
               

               
Cow position:
               
chrX:21205587-21205388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
459-707
               

               
Cow position:
               
chrX:11799453-11799696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
459-795
               

               
Cow position:
               
chrX:28080749-28081077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
459-796
               

               
Cow position:
               
chrX:19556744-19557086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
459-796
               

               
Cow position:
               
chrX:40517321-40517653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
459-839
               

               
Cow position:
               
chrX:24031071-24030681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
460-646
               

               
Cow position:
               
chrX:26131913-26132096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
460-661
               

               
Cow position:
               
chrX:4994746-4994547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
460-688
               

               
Cow position:
               
chrX:36859605-36859832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
460-690
               

               
Cow position:
               
chrX:17908958-17908732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
460-762
               

               
Cow position:
               
chrX:33736375-33736681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
87, 262
               

               
Conread position:
               
461-701
               

               
Cow position:
               
chrX:31981885-31981645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
462-690
               

               
Cow position:
               
chrX:45105873-45105648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
78, 18
               

               
Conread position:
               
464-629
               

               
Cow position:
               
chrX:34262974-34263137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 28
               

               
Conread position:
               
464-705
               

               
Cow position:
               
chrX:20859472-20859702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
465-686
               

               
Cow position:
               
chrX:2620358-2620137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
466-835
               

               
Cow position:
               
chrX:37070668-37070314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
296, 13
               

               
Conread position:
               
467-743
               

               
Cow position:
               
chrX:32803146-32802864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
467-796
               

               
Cow position:
               
chrX:5121631-5121959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
470-839
               

               
Cow position:
               
chrX:40483486-40483864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
472-689
               

               
Cow position:
               
chrX:4499373-4499590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 5
               

               
Conread position:
               
479-688
               

               
Cow position:
               
chrX:37128604-37128815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
479-706
               

               
Cow position:
               
chrX:36133439-36133212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
479-805
               

               
Cow position:
               
chrX:36291918-36291572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 260
               

               
Conread position:
               
480-703
               

               
Cow position:
               
chrX:33815924-33816148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 181
               

               
Conread position:
               
482-807
               

               
Cow position:
               
chrX:33964652-33964310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 252
               

               
Conread position:
               
483-682
               

               
Cow position:
               
chrX:32002666-32002462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
484-681
               

               
Cow position:
               
chrX:25332880-25333079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
485-671
               

               
Cow position:
               
chrX:48592453-48592265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
486-659
               

               
Cow position:
               
chrX:37411548-37411723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
486-660
               

               
Cow position:
               
chrX:908887-909062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 163
               

               
Conread position:
               
486-660
               

               
Cow position:
               
chrX:2930367-2930535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
486-664
               

               
Cow position:
               
chrX:5250006-5250177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
486-682
               

               
Cow position:
               
chrX:20805956-20805757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
486-689
               

               
Cow position:
               
chrX:27534204-27534007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
149, 40
               

               
Conread position:
               
486-699
               

               
Cow position:
               
chrX:40727042-40727258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
486-795
               

               
Cow position:
               
chrX:28838712-28839024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
180, 13
               

               
Conread position:
               
486-796
               

               
Cow position:
               
chrX:33674065-33673747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
486-840
               

               
Cow position:
               
chrX:42054915-42054552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 142
               

               
Conread position:
               
487-695
               

               
Cow position:
               
chrX:36238442-36238654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
487-711
               

               
Cow position:
               
chrX:6514524-6514294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
488-792
               

               
Cow position:
               
chrX:14297580-14297266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
488-796
               

               
Cow position:
               
chrX:26106990-26106683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
489-664
               

               
Cow position:
               
chrX:11908805-11908627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
489-685
               

               
Cow position:
               
chrX:4981210-4981408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
489-694
               

               
Cow position:
               
chrX:17617556-17617350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 94
               

               
Conread position:
               
489-711
               

               
Cow position:
               
chrX:23932474-23932248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
58, 141
               

               
Conread position:
               
489-780
               

               
Cow position:
               
chrX:337399-337690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
489-795
               

               
Cow position:
               
chrX:18794237-18793925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
489-798
               

               
Cow position:
               
chrX:46374551-46374237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
489-799
               

               
Cow position:
               
chrX:10904896-10904593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 112
               

               
Conread position:
               
489-802
               

               
Cow position:
               
chrX:409551-409865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
489-802
               

               
Cow position:
               
chrX:8137534-8137224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
489-802
               

               
Cow position:
               
chrX:25014638-25014326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
205, 32
               

               
Conread position:
               
489-802
               

               
Cow position:
               
chrX:28701496-28701815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
489-843
               

               
Cow position:
               
chrX:43800282-43799929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
490-617
               

               
Cow position:
               
chrX:18647509-18647379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
490-678
               

               
Cow position:
               
chrX:35566617-35566428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
490-786
               

               
Cow position:
               
chrX:39463317-39463014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
490-802
               

               
Cow position:
               
chrX:29315471-29315791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
490-802
               

               
Cow position:
               
chrX:37454794-37455102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
491-696
               

               
Cow position:
               
chrX:43789091-43788880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
56, 143
               

               
Conread position:
               
491-702
               

               
Cow position:
               
chrX:25199180-25199388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
491-841
               

               
Cow position:
               
chrX:48771584-48771940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
492-856
               

               
Cow position:
               
chrX:8856740-8857110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
221, 102
               

               
Conread position:
               
493-697
               

               
Cow position:
               
chrX:10409313-10409104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
493-806
               

               
Cow position:
               
chrX:10851780-10851455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
493-820
               

               
Cow position:
               
chrX:8943008-8942670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
494-633
               

               
Cow position:
               
chrX:41248638-41248501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
494-690
               

               
Cow position:
               
chrX:40037878-40038066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
494-802
               

               
Cow position:
               
chrX:20654650-20654968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
495-797
               

               
Cow position:
               
chrX:24206063-24206358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
495-803
               

               
Cow position:
               
chrX:37949547-37949865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 250
               

               
Conread position:
               
496-702
               

               
Cow position:
               
chrX:40357117-40357327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
496-798
               

               
Cow position:
               
chrX:10521897-10522205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
497-884
               

               
Cow position:
               
chrX:31804882-31805268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
498-687
               

               
Cow position:
               
chrX:27771310-27771117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
499-688
               

               
Cow position:
               
chrX:16354573-16354379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 120
               

               
Conread position:
               
499-795
               

               
Cow position:
               
chrX:38705320-38705617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
500-762
               

               
Cow position:
               
chrX:42198399-42198666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 104
               

               
Conread position:
               
501-800
               

               
Cow position:
               
chrX:23887848-23888154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 176
               

               
Conread position:
               
502-688
               

               
Cow position:
               
chrX:23520654-23520465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
502-795
               

               
Cow position:
               
chrX:18405677-18405385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
503-765
               

               
Cow position:
               
chrX:46160831-46160571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
503-802
               

               
Cow position:
               
chrX:26176917-26176613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 105
               

               
Conread position:
               
503-835
               

               
Cow position:
               
chrX:19622083-19622424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 36
               

               
Conread position:
               
504-711
               

               
Cow position:
               
chrX:25134424-25134220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
504-757
               

               
Cow position:
               
chrX:41754985-41755236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
504-796
               

               
Cow position:
               
chrX:6660265-6660563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
504-858
               

               
Cow position:
               
chrX:6683897-6683529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
43, 246
               

               
Conread position:
               
506-627
               

               
Cow position:
               
chrX:1333636-1333760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
507-689
               

               
Cow position:
               
chrX:20185640-20185824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
507-802
               

               
Cow position:
               
chrX:43831829-43831535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
192, 19
               

               
Conread position:
               
508-796
               

               
Cow position:
               
chrX:507798-507500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 194
               

               
Conread position:
               
508-802
               

               
Cow position:
               
chrX:38826597-38826303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
511-696
               

               
Cow position:
               
chrX:41761678-41761494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
511-787
               

               
Cow position:
               
chrX:488880-489164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 125
               

               
Conread position:
               
511-794
               

               
Cow position:
               
chrX:16410668-16410963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
34, 263
               

               
Conread position:
               
512-661
               

               
Cow position:
               
chrX:39355657-39355504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
512-802
               

               
Cow position:
               
chrX:30074574-30074869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
513-668
               

               
Cow position:
               
chrX:19400701-19400859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
513-795
               

               
Cow position:
               
chrX:39858307-39858032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 152
               

               
Conread position:
               
513-796
               

               
Cow position:
               
chrX:24805775-24805500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
187, 36
               

               
Conread position:
               
513-797
               

               
Cow position:
               
chrX:17563249-17562961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
513-831
               

               
Cow position:
               
chrX:25919270-25919595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
513-841
               

               
Cow position:
               
chrX:41235093-41235432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
514-727
               

               
Cow position:
               
chrX:17609698-17609483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
515-774
               

               
Cow position:
               
chrX:11916033-11915768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
515-792
               

               
Cow position:
               
chrX:20969842-20970119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
181, 133
               

               
Conread position:
               
515-835
               

               
Cow position:
               
chrX:11846959-11847264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
515-886
               

               
Cow position:
               
chrX:17485935-17485574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
516-661
               

               
Cow position:
               
chrX:3248792-3248654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
516-734
               

               
Cow position:
               
chrX:936735-936961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
517-661
               

               
Cow position:
               
chrX:36239272-36239125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
517-687
               

               
Cow position:
               
chrX:39382538-39382358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
517-715
               

               
Cow position:
               
chrX:43268630-43268827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
517-835
               

               
Cow position:
               
chrX:39436011-39435695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
181, 25
               

               
Conread position:
               
518-802
               

               
Cow position:
               
chrX:26610037-26610330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 21
               

               
Conread position:
               
521-803
               

               
Cow position:
               
chrX:5667039-5666751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
523-802
               

               
Cow position:
               
chrX:21663572-21663860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
525-800
               

               
Cow position:
               
chrX:11908100-11908386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
526-842
               

               
Cow position:
               
chrX:10844656-10844335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
527-689
               

               
Cow position:
               
chrX:37947719-37947881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
533-835
               

               
Cow position:
               
chrX:18799248-18798940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 218
               

               
Conread position:
               
534-689
               

               
Cow position:
               
chrX:19880803-19880956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
534-807
               

               
Cow position:
               
chrX:18598108-18598381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
170, 5
               

               
Conread position:
               
537-795
               

               
Cow position:
               
chrX:37905807-37906069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
159, 31
               

               
Conread position:
               
538-689
               

               
Cow position:
               
chrX:10282208-10282055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
538-802
               

               
Cow position:
               
chrX:37469078-37468805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
139, 108
               

               
Conread position:
               
539-692
               

               
Cow position:
               
chrX:27660283-27660436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
539-802
               

               
Cow position:
               
chrX:25191226-25191490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
227, 24
               

               
Conread position:
               
541-802
               

               
Cow position:
               
chrX:3908412-3908147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
82, 128
               

               
Conread position:
               
543-724
               

               
Cow position:
               
chrX:44664123-44664305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
543-762
               

               
Cow position:
               
chrX:25046149-25046369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 163
               

               
Conread position:
               
543-773
               

               
Cow position:
               
chrX:23547840-23547604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
145, 40
               

               
Conread position:
               
543-802
               

               
Cow position:
               
chrX:1018229-1017984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
543-802
               

               
Cow position:
               
chrX:39316059-39315800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
146, 79
               

               
Conread position:
               
543-835
               

               
Cow position:
               
chrX:23683004-23683297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 55
               

               
Conread position:
               
543-851
               

               
Cow position:
               
chrX:18226791-18226490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
220, 149
               

               
Conread position:
               
544-752
               

               
Cow position:
               
chrX:42176584-42176791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
53, 149
               

               
Conread position:
               
544-833
               

               
Cow position:
               
chrX:11199322-11199022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
169, 143
               

               
Conread position:
               
545-802
               

               
Cow position:
               
chrX:29586652-29586914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
545-802
               

               
Cow position:
               
chrX:38972712-38972972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 90
               

               
Conread position:
               
546-690
               

               
Cow position:
               
chrX:9541260-9541402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
546-795
               

               
Cow position:
               
chrX:46092604-46092349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
548-752
               

               
Cow position:
               
chrX:43467711-43467918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 182
               

               
Conread position:
               
550-690
               

               
Cow position:
               
chrX:9840888-9841026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
552-700
               

               
Cow position:
               
chrX:20782507-20782359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
552-791
               

               
Cow position:
               
chrX:11930629-11930866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
163, 28
               

               
Conread position:
               
552-802
               

               
Cow position:
               
chrX:38688288-38688545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
137, 19
               

               
Conread position:
               
552-803
               

               
Cow position:
               
chrX:19574461-19574720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
553-792
               

               
Cow position:
               
chrX:26340061-26339809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
555-802
               

               
Cow position:
               
chrX:25340983-25341244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
557-773
               

               
Cow position:
               
chrX:15921558-15921784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
557-774
               

               
Cow position:
               
chrX:41797704-41797911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 12
               

               
Conread position:
               
557-805
               

               
Cow position:
               
chrX:34340028-34340289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 184
               

               
Conread position:
               
560-846
               

               
Cow position:
               
chrX:2277211-2276915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
134, 32
               

               
Conread position:
               
561-799
               

               
Cow position:
               
chrX:14625633-14625870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
130, 47
               

               
Conread position:
               
562-796
               

               
Cow position:
               
chrX:24019387-24019154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
200, 44
               

               
Conread position:
               
562-802
               

               
Cow position:
               
chrX:29685177-29685424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
567-796
               

               
Cow position:
               
chrX:34655492-34655259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
571-794
               

               
Cow position:
               
chrX:11115340-11115109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
572-795
               

               
Cow position:
               
chrX:822802-822579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
573-801
               

               
Cow position:
               
chrX:16471753-16471978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
574-802
               

               
Cow position:
               
chrX:41799589-41799354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
577-795
               

               
Cow position:
               
chrX:12820615-12820843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
96, 174
               

               
Conread position:
               
578-802
               

               
Cow position:
               
chrX:40509706-40509930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
582-843
               

               
Cow position:
               
chrX:42225836-42225566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 165
               

               
Conread position:
               
586-798
               

               
Cow position:
               
chrX:1451408-1451624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
108, 160
               

               
Conread position:
               
594-762
               

               
Cow position:
               
chrX:8519794-8519966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
594-797
               

               
Cow position:
               
chrX:13065833-13065622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
599-802
               

               
Cow position:
               
chrX:42052868-42053076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
99, 142
               

               
Conread position:
               
609-802
               

               
Cow position:
               
chrX:34461306-34461504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
155, 78
               

               
Conread position:
               
609-868
               

               
Cow position:
               
chrX:12717704-12717981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 78
               

               
Conread position:
               
610-802
               

               
Cow position:
               
chrX:13459814-13459622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
634-802
               

               
Cow position:
               
chrX:27718832-27718663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 58
               

               
Conread position:
               
640-802
               

               
Cow position:
               
chrX:38335216-38335389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
930-1520
               

               
Cow position:
               
chrX:2255332-2254741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 142
               

               
Conread position:
               
930-1572
               

               
Cow position:
               
chrX:3143454-3144092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 272
               
Show alignments to all cow chromosomes.