Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 283-608 |
| Cow position: | chr1:81177557-81177860 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 313-613 |
| Cow position: | chr1:15902770-15902469 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 163, 268 |
| Conread position: | 338-609 |
| Cow position: | chr1:90413621-90413361 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 365-596 |
| Cow position: | chr1:39183603-39183836 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 370-602 |
| Cow position: | chr1:71782455-71782677 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 373-573 |
| Cow position: | chr1:49346256-49346060 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 373-602 |
| Cow position: | chr1:62732782-62732558 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 373-607 |
| Cow position: | chr1:46646595-46646376 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 373-609 |
| Cow position: | chr1:64189715-64189479 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 374-607 |
| Cow position: | chr1:66355502-66355733 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 374-609 |
| Cow position: | chr1:2998163-2997927 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 375-542 |
| Cow position: | chr1:95826148-95826315 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 375-614 |
| Cow position: | chr1:46005999-46006232 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 377-613 |
| Cow position: | chr1:18414259-18414492 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 378-605 |
| Cow position: | chr1:51565739-51565518 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 172 |
| Conread position: | 379-539 |
| Cow position: | chr1:86369528-86369369 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 379-564 |
| Cow position: | chr1:765051-765239 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 380-542 |
| Cow position: | chr1:79215663-79215824 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 380-565 |
| Cow position: | chr1:33921071-33921259 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 380-568 |
| Cow position: | chr1:90390172-90390363 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 50 |
| Conread position: | 380-611 |
| Cow position: | chr1:89548394-89548170 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 382-610 |
| Cow position: | chr1:70236062-70236283 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 88, 58 |
| Conread position: | 385-609 |
| Cow position: | chr1:93110412-93110639 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 386-607 |
| Cow position: | chr1:45925242-45925021 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 387-610 |
| Cow position: | chr1:26688273-26688494 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 390-557 |
| Cow position: | chr1:12226903-12227070 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 390-607 |
| Cow position: | chr1:59132013-59132236 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 192 |
| Conread position: | 390-612 |
| Cow position: | chr1:57119150-57119372 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 391-522 |
| Cow position: | chr1:67973891-67974020 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 391-574 |
| Cow position: | chr1:46206006-46205827 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 48 |
| Conread position: | 391-584 |
| Cow position: | chr1:25184306-25184118 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 391-592 |
| Cow position: | chr1:18283679-18283477 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 391-602 |
| Cow position: | chr1:47117088-47117291 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 391-609 |
| Cow position: | chr1:5278222-5278432 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 391-609 |
| Cow position: | chr1:45479393-45479606 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 160 |
| Conread position: | 392-600 |
| Cow position: | chr1:79115542-79115334 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 187 |
| Conread position: | 392-609 |
| Cow position: | chr1:54288995-54289213 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 84, 181 |
| Conread position: | 392-625 |
| Cow position: | chr1:53920783-53920552 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 74, 158 |
| Conread position: | 393-560 |
| Cow position: | chr1:13195238-13195404 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 104 |
| Conread position: | 393-608 |
| Cow position: | chr1:54478529-54478308 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 394-554 |
| Cow position: | chr1:38525802-38525639 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 116 |
| Conread position: | 395-596 |
| Cow position: | chr1:45310082-45310280 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 63, 158 |
| Conread position: | 395-613 |
| Cow position: | chr1:74946927-74947143 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 396-554 |
| Cow position: | chr1:36613898-36614056 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 397-532 |
| Cow position: | chr1:19416689-19416823 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 397-550 |
| Cow position: | chr1:63364818-63364666 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 397-554 |
| Cow position: | chr1:92981469-92981311 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 397-570 |
| Cow position: | chr1:49347370-49347200 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 156, 84 |
| Conread position: | 397-606 |
| Cow position: | chr1:62142299-62142503 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 397-609 |
| Cow position: | chr1:5347246-5347041 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 397-609 |
| Cow position: | chr1:35843733-35843948 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 397-609 |
| Cow position: | chr1:38205659-38205450 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 397-609 |
| Cow position: | chr1:45638669-45638468 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 397-609 |
| Cow position: | chr1:75183560-75183768 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 75, 156 |
| Conread position: | 397-610 |
| Cow position: | chr1:46218759-46218553 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 397-610 |
| Cow position: | chr1:102466490-102466283 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 397-613 |
| Cow position: | chr1:31871618-31871403 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 88, 10 |
| Conread position: | 398-537 |
| Cow position: | chr1:80886695-80886558 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 398-541 |
| Cow position: | chr1:75225103-75224961 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 398-557 |
| Cow position: | chr1:96043810-96043648 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 91 |
| Conread position: | 398-563 |
| Cow position: | chr1:43790043-43789879 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 398-571 |
| Cow position: | chr1:5102304-5102473 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 398-571 |
| Cow position: | chr1:46822159-46821983 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 398-599 |
| Cow position: | chr1:70416317-70416118 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 398-602 |
| Cow position: | chr1:90422893-90423095 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 398-603 |
| Cow position: | chr1:25793249-25793447 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 398-605 |
| Cow position: | chr1:53039520-53039719 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 398-608 |
| Cow position: | chr1:76096625-76096418 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 398-609 |
| Cow position: | chr1:20582131-20581922 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 41 |
| Conread position: | 398-609 |
| Cow position: | chr1:76170395-76170184 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 158 |
| Conread position: | 398-611 |
| Cow position: | chr1:22777353-22777568 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 185 |
| Conread position: | 398-613 |
| Cow position: | chr1:33986333-33986536 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 398-613 |
| Cow position: | chr1:44747049-44746839 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 398-613 |
| Cow position: | chr1:51904152-51904359 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 398-613 |
| Cow position: | chr1:97622030-97622241 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 78, 121 |
| Conread position: | 398-614 |
| Cow position: | chr1:52414775-52414984 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-614 |
| Cow position: | chr1:82378980-82378758 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-652 |
| Cow position: | chr1:56012341-56012096 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 399-548 |
| Cow position: | chr1:3570124-3570271 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 399-609 |
| Cow position: | chr1:54217204-54216995 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 399-613 |
| Cow position: | chr1:15314728-15314947 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 186 |
| Conread position: | 399-613 |
| Cow position: | chr1:61737285-61737072 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 154 |
| Conread position: | 400-549 |
| Cow position: | chr1:87149220-87149066 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 400-557 |
| Cow position: | chr1:80438431-80438594 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 400-600 |
| Cow position: | chr1:28678711-28678510 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 177 |
| Conread position: | 400-607 |
| Cow position: | chr1:3657179-3657381 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 400-607 |
| Cow position: | chr1:65665240-65665039 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 400-608 |
| Cow position: | chr1:3288961-3289160 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 400-608 |
| Cow position: | chr1:46839795-46839584 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 400-608 |
| Cow position: | chr1:50634072-50634277 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 400-608 |
| Cow position: | chr1:97603451-97603653 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 400-610 |
| Cow position: | chr1:541981-541772 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 400-614 |
| Cow position: | chr1:56643416-56643627 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 115 |
| Conread position: | 401-595 |
| Cow position: | chr1:28657496-28657690 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 402-574 |
| Cow position: | chr1:89007569-89007734 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 5 |
| Conread position: | 404-589 |
| Cow position: | chr1:50261745-50261929 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 151, 9 |
| Conread position: | 404-603 |
| Cow position: | chr1:95229146-95229347 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 177 |
| Conread position: | 404-613 |
| Cow position: | chr1:69415526-69415735 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 100 |
| Conread position: | 404-613 |
| Cow position: | chr1:92010500-92010283 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 26, 180 |
| Conread position: | 405-564 |
| Cow position: | chr1:54125045-54125202 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 406-609 |
| Cow position: | chr1:75998289-75998489 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 406-612 |
| Cow position: | chr1:21934001-21934200 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 149, 89 |
| Conread position: | 407-581 |
| Cow position: | chr1:80897725-80897888 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-587 |
| Cow position: | chr1:80384582-80384763 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 170 |
| Conread position: | 407-606 |
| Cow position: | chr1:71136331-71136134 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 32 |
| Conread position: | 407-607 |
| Cow position: | chr1:49130950-49131146 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 66, 116 |
| Conread position: | 407-609 |
| Cow position: | chr1:85411751-85411559 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 407-613 |
| Cow position: | chr1:81300902-81301116 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 408-541 |
| Cow position: | chr1:44086223-44086353 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 408-593 |
| Cow position: | chr1:6130560-6130738 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 408-608 |
| Cow position: | chr1:64218249-64218447 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 408-608 |
| Cow position: | chr1:96339914-96339727 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 408-613 |
| Cow position: | chr1:23041743-23041541 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 25 |
| Conread position: | 410-613 |
| Cow position: | chr1:95764915-95765112 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 413-581 |
| Cow position: | chr1:29338090-29337918 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 413-608 |
| Cow position: | chr1:4788709-4788517 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 413-608 |
| Cow position: | chr1:26531407-26531604 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 413-611 |
| Cow position: | chr1:70533763-70533960 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 132 |
| Conread position: | 413-613 |
| Cow position: | chr1:2765576-2765389 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 414-557 |
| Cow position: | chr1:93031591-93031734 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 414-581 |
| Cow position: | chr1:95871324-95871149 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 116 |
| Conread position: | 414-608 |
| Cow position: | chr1:31189941-31190127 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 414-608 |
| Cow position: | chr1:80764361-80764556 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 163 |
| Conread position: | 414-609 |
| Cow position: | chr1:30066795-30066599 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 415-605 |
| Cow position: | chr1:73901177-73900991 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 415-608 |
| Cow position: | chr1:41735446-41735641 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 415-612 |
| Cow position: | chr1:97962817-97962618 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 163 |
| Conread position: | 416-538 |
| Cow position: | chr1:23330396-23330518 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 416-605 |
| Cow position: | chr1:58825712-58825527 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 418-628 |
| Cow position: | chr1:22910523-22910317 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 424-610 |
| Cow position: | chr1:50045965-50045778 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 424-610 |
| Cow position: | chr1:81162178-81161980 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 430-594 |
| Cow position: | chr1:44511375-44511540 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 431-563 |
| Cow position: | chr1:20735550-20735420 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 431-609 |
| Cow position: | chr1:30442114-30441936 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 432-613 |
| Cow position: | chr1:3612181-3612353 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 433-607 |
| Cow position: | chr1:72732196-72732021 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 62 |
| Conread position: | 434-609 |
| Cow position: | chr1:29975452-29975621 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 436-613 |
| Cow position: | chr1:75347777-75347599 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 144 |
| Conread position: | 445-609 |
| Cow position: | chr1:89443336-89443500 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 108, 124 |
| Conread position: | 445-613 |
| Cow position: | chr1:69004534-69004372 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 445-613 |
| Cow position: | chr1:80973465-80973631 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 446-604 |
| Cow position: | chr1:48083870-48083712 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 446-613 |
| Cow position: | chr1:8192593-8192755 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 447-610 |
| Cow position: | chr1:6734592-6734437 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 448-613 |
| Cow position: | chr1:26424624-26424787 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 449-611 |
| Cow position: | chr1:29916551-29916388 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 457-606 |
| Cow position: | chr1:50345677-50345527 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 457-611 |
| Cow position: | chr1:73653513-73653663 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 5 |
| Conread position: | 459-608 |
| Cow position: | chr1:101772029-101771885 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 463-612 |
| Cow position: | chr1:30413714-30413569 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 478-609 |
| Cow position: | chr1:4451165-4451292 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 481-613 |
| Cow position: | chr1:57783111-57782982 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 482-613 |
| Cow position: | chr1:67014709-67014583 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 498-613 |
| Cow position: | chr1:92642359-92642473 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 78 |
Show alignments to all cow chromosomes.