Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 320-609 |
| Cow position: | chr12:4583168-4582880 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 373-610 |
| Cow position: | chr12:18966586-18966820 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 16 |
| Conread position: | 375-588 |
| Cow position: | chr12:32413690-32413468 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 377-607 |
| Cow position: | chr12:25312209-25312432 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 377-612 |
| Cow position: | chr12:42918626-42918407 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 378-528 |
| Cow position: | chr12:11499925-11499774 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 380-613 |
| Cow position: | chr12:5658582-5658816 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 381-601 |
| Cow position: | chr12:13657589-13657801 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 389-613 |
| Cow position: | chr12:30065090-30064870 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 390-606 |
| Cow position: | chr12:7645658-7645865 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 391-597 |
| Cow position: | chr12:5497679-5497875 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 391-605 |
| Cow position: | chr12:3816637-3816423 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 391-613 |
| Cow position: | chr12:29448798-29448578 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 396-571 |
| Cow position: | chr12:749506-749339 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 100 |
| Conread position: | 397-564 |
| Cow position: | chr12:11080952-11081121 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 397-574 |
| Cow position: | chr12:16205871-16205696 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 397-609 |
| Cow position: | chr12:27055749-27055542 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 398-571 |
| Cow position: | chr12:11520318-11520148 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 398-595 |
| Cow position: | chr12:45225844-45226040 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 398-596 |
| Cow position: | chr12:29691051-29691245 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 398-607 |
| Cow position: | chr12:18768927-18769134 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 398-609 |
| Cow position: | chr12:7996556-7996348 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 398-609 |
| Cow position: | chr12:33458286-33458083 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 119, 64 |
| Conread position: | 398-609 |
| Cow position: | chr12:40931470-40931677 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 154, 9 |
| Conread position: | 398-610 |
| Cow position: | chr12:25606852-25606638 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 398-612 |
| Cow position: | chr12:17109751-17109959 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 398-613 |
| Cow position: | chr12:39781194-39781413 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 399-557 |
| Cow position: | chr12:7274560-7274713 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 399-574 |
| Cow position: | chr12:36109117-36109292 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 399-608 |
| Cow position: | chr12:25619233-25619436 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 122, 97 |
| Conread position: | 399-609 |
| Cow position: | chr12:10763409-10763191 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 399-613 |
| Cow position: | chr12:48425855-48425645 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 134 |
| Conread position: | 400-584 |
| Cow position: | chr12:14855957-14855773 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 404-606 |
| Cow position: | chr12:18094030-18093831 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 72, 101 |
| Conread position: | 404-609 |
| Cow position: | chr12:40715908-40716106 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 406-609 |
| Cow position: | chr12:44057655-44057455 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 406-609 |
| Cow position: | chr12:47486972-47486766 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 407-597 |
| Cow position: | chr12:34242188-34242378 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 73, 165 |
| Conread position: | 407-613 |
| Cow position: | chr12:41642569-41642362 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 63, 95 |
| Conread position: | 408-608 |
| Cow position: | chr12:30596605-30596402 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 174 |
| Conread position: | 408-611 |
| Cow position: | chr12:1223212-1223408 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 409-609 |
| Cow position: | chr12:24559494-24559292 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 174 |
| Conread position: | 413-554 |
| Cow position: | chr12:28017177-28017035 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 413-594 |
| Cow position: | chr12:44908147-44907966 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 414-554 |
| Cow position: | chr12:21829201-21829063 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 414-609 |
| Cow position: | chr12:15230690-15230881 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 415-574 |
| Cow position: | chr12:25933812-25933653 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 416-609 |
| Cow position: | chr12:14325146-14325331 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 424-611 |
| Cow position: | chr12:31528735-31528923 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 153 |
| Conread position: | 425-613 |
| Cow position: | chr12:27038623-27038823 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 426-604 |
| Cow position: | chr12:10846537-10846705 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 430-593 |
| Cow position: | chr12:45541822-45541662 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 433-609 |
| Cow position: | chr12:17262965-17262790 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 433-609 |
| Cow position: | chr12:24204201-24204372 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 457-574 |
| Cow position: | chr12:39754370-39754255 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 96 |
Show alignments to all cow chromosomes.