Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 355-587 |
| Cow position: | chr14:38688418-38688185 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 357-571 |
| Cow position: | chr14:39058397-39058613 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 373-609 |
| Cow position: | chr14:8488027-8488255 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 7, 133 |
| Conread position: | 373-613 |
| Cow position: | chr14:21017950-21018183 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 376-609 |
| Cow position: | chr14:27103920-27104148 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 377-543 |
| Cow position: | chr14:17212624-17212459 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 140 |
| Conread position: | 378-549 |
| Cow position: | chr14:10114805-10114973 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 100, 62 |
| Conread position: | 379-550 |
| Cow position: | chr14:24838548-24838375 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 154, 19 |
| Conread position: | 381-609 |
| Cow position: | chr14:37333543-37333765 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 389-609 |
| Cow position: | chr14:23008037-23008246 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 390-612 |
| Cow position: | chr14:25386035-25385814 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 106, 17 |
| Conread position: | 390-613 |
| Cow position: | chr14:21691424-21691202 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 391-574 |
| Cow position: | chr14:9065745-9065928 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 391-574 |
| Cow position: | chr14:20795630-20795808 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 164, 15 |
| Conread position: | 391-586 |
| Cow position: | chr14:36081061-36080872 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 391-606 |
| Cow position: | chr14:18979340-18979135 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 164, 15 |
| Conread position: | 391-613 |
| Cow position: | chr14:29860729-29860940 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 394-541 |
| Cow position: | chr14:15040073-15039932 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 394-612 |
| Cow position: | chr14:43031651-43031869 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 396-609 |
| Cow position: | chr14:35700284-35700495 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 80, 157 |
| Conread position: | 397-570 |
| Cow position: | chr14:38355046-38355220 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 69, 57 |
| Conread position: | 397-574 |
| Cow position: | chr14:47693557-47693730 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 397-584 |
| Cow position: | chr14:41531806-41531620 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 397-594 |
| Cow position: | chr14:43566021-43565827 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 397-601 |
| Cow position: | chr14:47519894-47519691 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 397-606 |
| Cow position: | chr14:10692404-10692202 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 397-608 |
| Cow position: | chr14:26108490-26108701 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 397-609 |
| Cow position: | chr14:20429431-20429649 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 186 |
| Conread position: | 398-550 |
| Cow position: | chr14:5677221-5677370 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 398-551 |
| Cow position: | chr14:8518126-8517977 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 12, 58 |
| Conread position: | 398-554 |
| Cow position: | chr14:6582854-6583015 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 398-557 |
| Cow position: | chr14:29481526-29481367 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 148 |
| Conread position: | 398-570 |
| Cow position: | chr14:44031893-44032067 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-581 |
| Cow position: | chr14:37624910-37624732 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 73, 9 |
| Conread position: | 398-583 |
| Cow position: | chr14:26153410-26153226 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 398-590 |
| Cow position: | chr14:20701958-20701769 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 398-601 |
| Cow position: | chr14:23107177-23107385 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 398-606 |
| Cow position: | chr14:7582589-7582387 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 398-606 |
| Cow position: | chr14:7813709-7813506 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 79, 96 |
| Conread position: | 398-607 |
| Cow position: | chr14:7648162-7647951 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 78, 183 |
| Conread position: | 398-608 |
| Cow position: | chr14:2189493-2189701 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 398-608 |
| Cow position: | chr14:28605091-28605301 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 398-610 |
| Cow position: | chr14:6441766-6441979 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 398-613 |
| Cow position: | chr14:6985094-6984893 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 398-613 |
| Cow position: | chr14:26493731-26493947 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 399-607 |
| Cow position: | chr14:19023039-19022831 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 399-608 |
| Cow position: | chr14:44861372-44861169 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 399-609 |
| Cow position: | chr14:47604436-47604230 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 400-608 |
| Cow position: | chr14:26960554-26960349 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 400-609 |
| Cow position: | chr14:37679142-37678934 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 402-613 |
| Cow position: | chr14:13928260-13928051 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 404-613 |
| Cow position: | chr14:45849354-45849148 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 151 |
| Conread position: | 407-569 |
| Cow position: | chr14:26805185-26805020 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 407-612 |
| Cow position: | chr14:33553062-33553258 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 148, 89 |
| Conread position: | 407-613 |
| Cow position: | chr14:28565343-28565545 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 413-608 |
| Cow position: | chr14:21369241-21369432 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 413-608 |
| Cow position: | chr14:47973857-47974048 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 64, 134 |
| Conread position: | 414-612 |
| Cow position: | chr14:12559603-12559408 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 415-609 |
| Cow position: | chr14:47138913-47138721 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 416-554 |
| Cow position: | chr14:20284029-20284169 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 418-574 |
| Cow position: | chr14:10935827-10935674 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 418-609 |
| Cow position: | chr14:20045429-20045620 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 419-613 |
| Cow position: | chr14:34257039-34256853 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 427-608 |
| Cow position: | chr14:21084225-21084409 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 152 |
| Conread position: | 430-554 |
| Cow position: | chr14:10936172-10936296 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 430-557 |
| Cow position: | chr14:28565193-28565316 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 447-606 |
| Cow position: | chr14:45515668-45515512 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 449-613 |
| Cow position: | chr14:44595215-44595055 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 455-608 |
| Cow position: | chr14:28327208-28327056 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 114 |
| Conread position: | 459-612 |
| Cow position: | chr14:22657168-22657316 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 149, 72 |
| Conread position: | 463-599 |
| Cow position: | chr14:31399518-31399651 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 478-612 |
| Cow position: | chr14:25378557-25378421 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 101 |
Show alignments to all cow chromosomes.