Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 276-606 |
| Cow position: | chr15:3571566-3571892 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 373-607 |
| Cow position: | chr15:31599223-31599444 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 373-607 |
| Cow position: | chr15:31907538-31907759 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 373-609 |
| Cow position: | chr15:22854290-22854518 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 376-560 |
| Cow position: | chr15:39226855-39226672 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 378-609 |
| Cow position: | chr15:39200667-39200894 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 88 |
| Conread position: | 379-594 |
| Cow position: | chr15:23548101-23547891 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 379-609 |
| Cow position: | chr15:20370837-20370611 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 380-608 |
| Cow position: | chr15:6749957-6749735 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 380-610 |
| Cow position: | chr15:47821268-47821491 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 385-613 |
| Cow position: | chr15:450159-449934 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 168, 101 |
| Conread position: | 386-609 |
| Cow position: | chr15:3572804-3572587 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 389-521 |
| Cow position: | chr15:691163-691032 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 390-609 |
| Cow position: | chr15:17788010-17788222 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 390-613 |
| Cow position: | chr15:31545449-31545228 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 391-508 |
| Cow position: | chr15:28835120-28835239 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 391-564 |
| Cow position: | chr15:2201202-2201377 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 391-607 |
| Cow position: | chr15:8230665-8230452 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 391-613 |
| Cow position: | chr15:10569208-10568989 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 391-613 |
| Cow position: | chr15:12036715-12036929 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 392-550 |
| Cow position: | chr15:2117784-2117941 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 392-613 |
| Cow position: | chr15:43611982-43612202 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 120 |
| Conread position: | 393-608 |
| Cow position: | chr15:17213362-17213568 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 394-609 |
| Cow position: | chr15:21836593-21836795 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 395-613 |
| Cow position: | chr15:19725807-19725599 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 396-564 |
| Cow position: | chr15:44296993-44297158 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 396-608 |
| Cow position: | chr15:42195359-42195152 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 396-609 |
| Cow position: | chr15:24284889-24285096 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 396-613 |
| Cow position: | chr15:26934047-26933829 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 69, 176 |
| Conread position: | 397-574 |
| Cow position: | chr15:31483272-31483452 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 397-609 |
| Cow position: | chr15:12163616-12163405 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 82, 138 |
| Conread position: | 398-527 |
| Cow position: | chr15:45661489-45661361 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 398-554 |
| Cow position: | chr15:51582947-51583100 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 398-555 |
| Cow position: | chr15:14323508-14323354 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 398-569 |
| Cow position: | chr15:19323227-19323396 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 398-584 |
| Cow position: | chr15:34037281-34037099 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 398-607 |
| Cow position: | chr15:15214921-15215131 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 179 |
| Conread position: | 398-608 |
| Cow position: | chr15:23992755-23992961 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 398-608 |
| Cow position: | chr15:24977269-24977065 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 398-609 |
| Cow position: | chr15:5722755-5722560 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 398-609 |
| Cow position: | chr15:22886462-22886664 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 398-609 |
| Cow position: | chr15:23109379-23109167 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 179 |
| Conread position: | 398-612 |
| Cow position: | chr15:20777922-20778136 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 398-612 |
| Cow position: | chr15:30958305-30958096 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-612 |
| Cow position: | chr15:44879511-44879720 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 17 |
| Conread position: | 398-613 |
| Cow position: | chr15:24411325-24411539 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 78, 150 |
| Conread position: | 398-613 |
| Cow position: | chr15:34255813-34255609 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-613 |
| Cow position: | chr15:50561482-50561279 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 399-584 |
| Cow position: | chr15:12170150-12170335 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 399-612 |
| Cow position: | chr15:14020384-14020604 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 188 |
| Conread position: | 399-613 |
| Cow position: | chr15:8021962-8022172 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 399-613 |
| Cow position: | chr15:27247411-27247618 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 99 |
| Conread position: | 400-571 |
| Cow position: | chr15:5527021-5527191 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 400-608 |
| Cow position: | chr15:39894504-39894700 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 400-609 |
| Cow position: | chr15:2799887-2800096 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 142 |
| Conread position: | 400-609 |
| Cow position: | chr15:9494390-9494180 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 400-610 |
| Cow position: | chr15:20482939-20482730 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 400-610 |
| Cow position: | chr15:49238082-49237877 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 400-651 |
| Cow position: | chr15:37918552-37918795 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 180 |
| Conread position: | 404-607 |
| Cow position: | chr15:27863416-27863212 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 73, 173 |
| Conread position: | 404-609 |
| Cow position: | chr15:24864353-24864154 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 407-554 |
| Cow position: | chr15:10189279-10189424 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 414-612 |
| Cow position: | chr15:31617086-31616887 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 166 |
| Conread position: | 414-613 |
| Cow position: | chr15:35283545-35283347 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 430-609 |
| Cow position: | chr15:7962018-7962194 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 431-590 |
| Cow position: | chr15:4216202-4216049 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 434-563 |
| Cow position: | chr15:28177394-28177525 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 435-609 |
| Cow position: | chr15:40498352-40498177 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 438-608 |
| Cow position: | chr15:27749232-27749069 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 440-607 |
| Cow position: | chr15:36659166-36659005 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 113 |
| Conread position: | 445-609 |
| Cow position: | chr15:26421647-26421485 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 445-613 |
| Cow position: | chr15:9178251-9178087 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 448-613 |
| Cow position: | chr15:38322789-38322955 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 451-613 |
| Cow position: | chr15:11957497-11957658 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 458-608 |
| Cow position: | chr15:36839209-36839060 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 459-574 |
| Cow position: | chr15:35663415-35663532 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 467-609 |
| Cow position: | chr15:46005674-46005536 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 470-655 |
| Cow position: | chr15:23140147-23139971 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 498-610 |
| Cow position: | chr15:27732417-27732528 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 78 |
Show alignments to all cow chromosomes.