Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 143-382 |
| Cow position: | chr16:2000970-2001208 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 351-574 |
| Cow position: | chr16:9407648-9407867 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 365-608 |
| Cow position: | chr16:44581-44345 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 369-560 |
| Cow position: | chr16:20664503-20664316 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 369-560 |
| Cow position: | chr16:34384914-34384726 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 373-574 |
| Cow position: | chr16:25464261-25464067 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 373-613 |
| Cow position: | chr16:45693351-45693118 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 373-613 |
| Cow position: | chr16:51069703-51069947 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 377-530 |
| Cow position: | chr16:29095062-29094910 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 378-574 |
| Cow position: | chr16:10611427-10611615 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 378-581 |
| Cow position: | chr16:9510673-9510869 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 378-609 |
| Cow position: | chr16:26134168-26134395 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 378-651 |
| Cow position: | chr16:20260677-20260403 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 61 |
| Conread position: | 379-542 |
| Cow position: | chr16:11772046-11772209 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 380-610 |
| Cow position: | chr16:33121804-33121583 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 383-563 |
| Cow position: | chr16:47116262-47116088 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 390-612 |
| Cow position: | chr16:53267914-53267696 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 391-583 |
| Cow position: | chr16:31490508-31490319 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 6, 107 |
| Conread position: | 391-606 |
| Cow position: | chr16:28454109-28454312 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 391-608 |
| Cow position: | chr16:34210216-34210432 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 391-609 |
| Cow position: | chr16:22808364-22808588 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 391-610 |
| Cow position: | chr16:42312574-42312359 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 392-555 |
| Cow position: | chr16:17616949-17617109 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 396-609 |
| Cow position: | chr16:228309-228522 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 396-613 |
| Cow position: | chr16:27014087-27013865 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 396-613 |
| Cow position: | chr16:38621143-38620926 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 397-557 |
| Cow position: | chr16:1440613-1440457 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 397-606 |
| Cow position: | chr16:23066840-23066639 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 397-607 |
| Cow position: | chr16:47368936-47368738 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 397-609 |
| Cow position: | chr16:18427366-18427161 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 398-541 |
| Cow position: | chr16:55070334-55070480 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 398-542 |
| Cow position: | chr16:4708716-4708861 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 398-543 |
| Cow position: | chr16:49122081-49122226 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-551 |
| Cow position: | chr16:8526780-8526938 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 398-552 |
| Cow position: | chr16:31222721-31222568 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 398-553 |
| Cow position: | chr16:11777013-11777175 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 398-571 |
| Cow position: | chr16:50114373-50114196 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 398-608 |
| Cow position: | chr16:11662217-11662011 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 398-608 |
| Cow position: | chr16:52577642-52577432 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 398-609 |
| Cow position: | chr16:16055877-16056086 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 398-609 |
| Cow position: | chr16:18557078-18557291 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 76, 180 |
| Conread position: | 398-609 |
| Cow position: | chr16:31419636-31419420 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 20, 186 |
| Conread position: | 398-618 |
| Cow position: | chr16:16946347-16946572 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 184 |
| Conread position: | 399-611 |
| Cow position: | chr16:48493365-48493150 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 93 |
| Conread position: | 399-613 |
| Cow position: | chr16:11085197-11085411 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 399-613 |
| Cow position: | chr16:14974366-14974570 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 399-613 |
| Cow position: | chr16:19977138-19976940 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 399-628 |
| Cow position: | chr16:49321139-49320920 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 400-607 |
| Cow position: | chr16:19002909-19003112 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 400-613 |
| Cow position: | chr16:15809161-15808946 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 201 |
| Conread position: | 400-613 |
| Cow position: | chr16:44898579-44898779 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 401-613 |
| Cow position: | chr16:16546250-16546044 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 404-614 |
| Cow position: | chr16:2618808-2619011 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 407-571 |
| Cow position: | chr16:56283121-56282957 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 146, 102 |
| Conread position: | 407-609 |
| Cow position: | chr16:15806128-15805928 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 91 |
| Conread position: | 407-613 |
| Cow position: | chr16:8704432-8704237 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 87 |
| Conread position: | 409-609 |
| Cow position: | chr16:26155968-26156163 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 413-548 |
| Cow position: | chr16:52565589-52565454 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 414-600 |
| Cow position: | chr16:327793-327978 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 414-609 |
| Cow position: | chr16:28827008-28827205 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 414-609 |
| Cow position: | chr16:43082072-43082258 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 414-612 |
| Cow position: | chr16:15938362-15938558 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 415-609 |
| Cow position: | chr16:53420505-53420318 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 415-613 |
| Cow position: | chr16:36930150-36930347 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 140, 65 |
| Conread position: | 416-608 |
| Cow position: | chr16:12072802-12072616 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 424-603 |
| Cow position: | chr16:32837389-32837564 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 429-609 |
| Cow position: | chr16:23163421-23163602 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 430-571 |
| Cow position: | chr16:23978280-23978423 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 430-612 |
| Cow position: | chr16:4499577-4499405 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 430-613 |
| Cow position: | chr16:55586457-55586635 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 431-593 |
| Cow position: | chr16:5511959-5511796 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 146 |
| Conread position: | 432-610 |
| Cow position: | chr16:22872229-22872395 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 433-603 |
| Cow position: | chr16:28266882-28267043 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 433-613 |
| Cow position: | chr16:10303600-10303776 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 120 |
| Conread position: | 444-605 |
| Cow position: | chr16:5333455-5333609 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 449-607 |
| Cow position: | chr16:41711806-41711651 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 449-613 |
| Cow position: | chr16:52222197-52222356 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 459-609 |
| Cow position: | chr16:56104789-56104938 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 478-613 |
| Cow position: | chr16:4979907-4979771 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 498-613 |
| Cow position: | chr16:17606381-17606267 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 673-928 |
| Cow position: | chr16:34247502-34247760 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 52 |
Show alignments to all cow chromosomes.