Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 163-381 |
| Cow position: | chr18:30110946-30111160 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 165, 62 |
| Conread position: | 370-609 |
| Cow position: | chr18:2438588-2438823 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 373-609 |
| Cow position: | chr18:6158084-6157857 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 373-609 |
| Cow position: | chr18:40202634-40202865 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 124 |
| Conread position: | 373-613 |
| Cow position: | chr18:55696852-55697084 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 378-593 |
| Cow position: | chr18:51537517-51537724 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 389-607 |
| Cow position: | chr18:37331368-37331583 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 164 |
| Conread position: | 390-549 |
| Cow position: | chr18:28794995-28794837 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 390-566 |
| Cow position: | chr18:4040326-4040153 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 390-574 |
| Cow position: | chr18:48036976-48036792 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 390-609 |
| Cow position: | chr18:25970490-25970692 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 391-538 |
| Cow position: | chr18:4890909-4890763 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 82, 7 |
| Conread position: | 391-597 |
| Cow position: | chr18:30566403-30566603 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 391-610 |
| Cow position: | chr18:26334648-26334872 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 391-610 |
| Cow position: | chr18:32909201-32908989 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 391-612 |
| Cow position: | chr18:16298273-16298042 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 392-560 |
| Cow position: | chr18:29949902-29949737 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 163, 63 |
| Conread position: | 392-609 |
| Cow position: | chr18:35767324-35767114 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 6 |
| Conread position: | 394-609 |
| Cow position: | chr18:5756135-5755921 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 161 |
| Conread position: | 395-609 |
| Cow position: | chr18:24363909-24364117 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 395-613 |
| Cow position: | chr18:29796276-29796493 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 397-554 |
| Cow position: | chr18:7409152-7409307 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 397-559 |
| Cow position: | chr18:4378916-4378756 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 158, 9 |
| Conread position: | 397-578 |
| Cow position: | chr18:24221721-24221544 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 397-582 |
| Cow position: | chr18:48458822-48458641 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 397-584 |
| Cow position: | chr18:44493334-44493518 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 397-609 |
| Cow position: | chr18:34324798-34325011 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 398-559 |
| Cow position: | chr18:49940566-49940721 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 398-589 |
| Cow position: | chr18:48717795-48717978 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 157, 9 |
| Conread position: | 398-607 |
| Cow position: | chr18:21575129-21574927 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 398-607 |
| Cow position: | chr18:26373071-26372862 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-609 |
| Cow position: | chr18:15831452-15831651 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 398-609 |
| Cow position: | chr18:16841899-16842120 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 15, 190 |
| Conread position: | 398-609 |
| Cow position: | chr18:38126298-38126508 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 398-609 |
| Cow position: | chr18:40893425-40893216 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 162 |
| Conread position: | 398-609 |
| Cow position: | chr18:46320831-46321037 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 398-612 |
| Cow position: | chr18:1190571-1190781 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 398-613 |
| Cow position: | chr18:19364084-19363875 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 135, 98 |
| Conread position: | 398-613 |
| Cow position: | chr18:43712197-43711984 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 398-613 |
| Cow position: | chr18:50700835-50700623 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 399-610 |
| Cow position: | chr18:45961122-45961333 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 399-613 |
| Cow position: | chr18:23714721-23714948 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 400-594 |
| Cow position: | chr18:35797760-35797578 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 400-609 |
| Cow position: | chr18:51587398-51587602 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 155, 66 |
| Conread position: | 402-603 |
| Cow position: | chr18:10101632-10101438 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 79, 5 |
| Conread position: | 402-608 |
| Cow position: | chr18:51298627-51298423 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 61, 101 |
| Conread position: | 407-547 |
| Cow position: | chr18:51241168-51241027 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 407-609 |
| Cow position: | chr18:716515-716318 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 407-609 |
| Cow position: | chr18:11362392-11362193 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 70, 142 |
| Conread position: | 407-609 |
| Cow position: | chr18:33842942-33843146 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 414-572 |
| Cow position: | chr18:35608061-35607902 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 419-609 |
| Cow position: | chr18:43113818-43114003 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 136, 77 |
| Conread position: | 419-610 |
| Cow position: | chr18:44400577-44400389 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 421-613 |
| Cow position: | chr18:21706055-21706244 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 424-609 |
| Cow position: | chr18:24855718-24855904 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 88 |
| Conread position: | 430-569 |
| Cow position: | chr18:21094985-21095126 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 430-609 |
| Cow position: | chr18:16726768-16726590 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 432-559 |
| Cow position: | chr18:44408536-44408406 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 432-600 |
| Cow position: | chr18:10687476-10687648 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 148 |
| Conread position: | 433-609 |
| Cow position: | chr18:15689403-15689226 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 148 |
| Conread position: | 437-613 |
| Cow position: | chr18:20422864-20423038 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 440-607 |
| Cow position: | chr18:32773988-32773820 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 140 |
| Conread position: | 440-608 |
| Cow position: | chr18:21681869-21682032 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 17 |
| Conread position: | 445-609 |
| Cow position: | chr18:33275394-33275235 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 445-612 |
| Cow position: | chr18:23425023-23424856 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 449-609 |
| Cow position: | chr18:25002789-25002951 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 473-609 |
| Cow position: | chr18:38793811-38793945 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.