Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 319-502 |
| Cow position: | chr19:42646606-42646792 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 352-613 |
| Cow position: | chr19:7030136-7029877 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 125, 55 |
| Conread position: | 373-594 |
| Cow position: | chr19:31380812-31381025 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 377-609 |
| Cow position: | chr19:36976716-36976949 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 378-593 |
| Cow position: | chr19:46498123-46497915 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 379-611 |
| Cow position: | chr19:15937020-15936797 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 381-609 |
| Cow position: | chr19:24689483-24689247 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 183 |
| Conread position: | 381-609 |
| Cow position: | chr19:36245301-36245532 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 171 |
| Conread position: | 386-542 |
| Cow position: | chr19:41459378-41459224 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 11 |
| Conread position: | 390-609 |
| Cow position: | chr19:952870-952656 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 390-609 |
| Cow position: | chr19:9387815-9387599 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 390-609 |
| Cow position: | chr19:38871248-38871028 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 391-604 |
| Cow position: | chr19:2342653-2342450 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 391-609 |
| Cow position: | chr19:31126976-31126759 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 88, 15 |
| Conread position: | 392-581 |
| Cow position: | chr19:47783584-47783776 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 394-606 |
| Cow position: | chr19:39250434-39250232 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 192, 36 |
| Conread position: | 395-595 |
| Cow position: | chr19:1153383-1153180 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 396-609 |
| Cow position: | chr19:24721852-24721640 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 397-562 |
| Cow position: | chr19:11759055-11759222 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 397-602 |
| Cow position: | chr19:26003439-26003647 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 186 |
| Conread position: | 397-613 |
| Cow position: | chr19:54225137-54225350 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 137, 42 |
| Conread position: | 398-544 |
| Cow position: | chr19:35083974-35084115 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-554 |
| Cow position: | chr19:11147451-11147605 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 398-571 |
| Cow position: | chr19:39222937-39223104 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 398-593 |
| Cow position: | chr19:2280474-2280662 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 398-604 |
| Cow position: | chr19:14254559-14254760 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 139, 69 |
| Conread position: | 398-607 |
| Cow position: | chr19:19662208-19662011 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 100, 9 |
| Conread position: | 398-608 |
| Cow position: | chr19:27346490-27346686 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 398-609 |
| Cow position: | chr19:12040791-12040586 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-609 |
| Cow position: | chr19:30935597-30935810 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 398-619 |
| Cow position: | chr19:28842186-28842407 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 179 |
| Conread position: | 399-545 |
| Cow position: | chr19:38708325-38708176 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 399-607 |
| Cow position: | chr19:32214970-32214765 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 399-612 |
| Cow position: | chr19:43727305-43727096 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 206, 71 |
| Conread position: | 399-613 |
| Cow position: | chr19:31614281-31614069 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 91 |
| Conread position: | 400-559 |
| Cow position: | chr19:54817363-54817523 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 400-575 |
| Cow position: | chr19:25594327-25594160 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 400-591 |
| Cow position: | chr19:22932378-22932569 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 400-601 |
| Cow position: | chr19:5648500-5648695 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 154, 36 |
| Conread position: | 400-606 |
| Cow position: | chr19:35345100-35344891 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 182 |
| Conread position: | 400-610 |
| Cow position: | chr19:25271248-25271453 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 400-613 |
| Cow position: | chr19:21284909-21285119 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 70, 154 |
| Conread position: | 403-613 |
| Cow position: | chr19:4824813-4825023 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 175 |
| Conread position: | 404-609 |
| Cow position: | chr19:20291925-20292129 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 172 |
| Conread position: | 407-612 |
| Cow position: | chr19:11876538-11876741 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 408-606 |
| Cow position: | chr19:48479138-48478946 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 409-566 |
| Cow position: | chr19:46306183-46306334 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 409-613 |
| Cow position: | chr19:1712978-1713183 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 88 |
| Conread position: | 414-609 |
| Cow position: | chr19:11636788-11636976 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 414-609 |
| Cow position: | chr19:31827247-31827062 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 98 |
| Conread position: | 414-610 |
| Cow position: | chr19:38025850-38025654 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 175 |
| Conread position: | 414-611 |
| Cow position: | chr19:55236643-55236451 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 414-613 |
| Cow position: | chr19:36461371-36461571 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 417-609 |
| Cow position: | chr19:53738488-53738299 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 171, 135 |
| Conread position: | 419-554 |
| Cow position: | chr19:24328779-24328643 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 419-571 |
| Cow position: | chr19:5986388-5986233 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 423-609 |
| Cow position: | chr19:50658287-50658102 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 78, 143 |
| Conread position: | 424-554 |
| Cow position: | chr19:39986194-39986331 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 425-609 |
| Cow position: | chr19:7838902-7839079 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 426-613 |
| Cow position: | chr19:35064044-35064236 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 155 |
| Conread position: | 427-609 |
| Cow position: | chr19:6735078-6735266 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 431-553 |
| Cow position: | chr19:42765097-42765220 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 445-620 |
| Cow position: | chr19:36318432-36318258 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 446-544 |
| Cow position: | chr19:5201869-5201967 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 449-613 |
| Cow position: | chr19:2821705-2821542 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 455-563 |
| Cow position: | chr19:42416337-42416446 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 458-610 |
| Cow position: | chr19:51800462-51800611 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 459-609 |
| Cow position: | chr19:9100260-9100109 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 459-609 |
| Cow position: | chr19:21091207-21091060 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 94 |
| Conread position: | 477-609 |
| Cow position: | chr19:10207703-10207572 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 480-608 |
| Cow position: | chr19:16110096-16110225 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 100 |
Show alignments to all cow chromosomes.