Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 369-539 |
| Cow position: | chr23:26067303-26067137 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 373-613 |
| Cow position: | chr23:22660375-22660611 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 126 |
| Conread position: | 374-599 |
| Cow position: | chr23:5389911-5389686 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 148 |
| Conread position: | 378-603 |
| Cow position: | chr23:14840309-14840529 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 378-609 |
| Cow position: | chr23:19636056-19636283 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 380-554 |
| Cow position: | chr23:11564174-11564346 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 113 |
| Conread position: | 389-535 |
| Cow position: | chr23:18967692-18967839 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 391-580 |
| Cow position: | chr23:12366278-12366465 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 391-592 |
| Cow position: | chr23:347554-347754 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 391-609 |
| Cow position: | chr23:37223879-37224090 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 391-613 |
| Cow position: | chr23:16237072-16237278 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 392-613 |
| Cow position: | chr23:26051231-26051009 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 393-603 |
| Cow position: | chr23:18326995-18326790 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 394-557 |
| Cow position: | chr23:19981495-19981658 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 394-602 |
| Cow position: | chr23:8929951-8930154 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 394-609 |
| Cow position: | chr23:16793771-16793561 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 395-612 |
| Cow position: | chr23:21847944-21847726 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 396-605 |
| Cow position: | chr23:29272299-29272094 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 397-601 |
| Cow position: | chr23:38941808-38941605 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 397-608 |
| Cow position: | chr23:14126751-14126546 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 397-609 |
| Cow position: | chr23:35155562-35155351 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 79, 127 |
| Conread position: | 397-610 |
| Cow position: | chr23:4956207-4956002 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 153 |
| Conread position: | 397-610 |
| Cow position: | chr23:26217742-26217539 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 398-567 |
| Cow position: | chr23:28701173-28701003 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 398-571 |
| Cow position: | chr23:9812051-9812219 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 398-587 |
| Cow position: | chr23:24411193-24411003 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 171 |
| Conread position: | 398-606 |
| Cow position: | chr23:23191978-23192170 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 398-608 |
| Cow position: | chr23:20585514-20585722 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 72, 149 |
| Conread position: | 398-608 |
| Cow position: | chr23:21866928-21866718 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 78, 125 |
| Conread position: | 398-609 |
| Cow position: | chr23:7611446-7611243 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 398-609 |
| Cow position: | chr23:28721051-28721258 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 400-606 |
| Cow position: | chr23:35177506-35177298 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 400-608 |
| Cow position: | chr23:21275834-21276044 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 400-609 |
| Cow position: | chr23:22419156-22418966 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 400-613 |
| Cow position: | chr23:26861616-26861413 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 401-546 |
| Cow position: | chr23:30735967-30736109 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 401-602 |
| Cow position: | chr23:30308086-30307891 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 402-613 |
| Cow position: | chr23:13360008-13359798 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 74, 5 |
| Conread position: | 403-608 |
| Cow position: | chr23:17000879-17000687 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 407-609 |
| Cow position: | chr23:1717371-1717574 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 70, 173 |
| Conread position: | 410-610 |
| Cow position: | chr23:17092326-17092522 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 414-609 |
| Cow position: | chr23:28894784-28894979 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 140 |
| Conread position: | 416-556 |
| Cow position: | chr23:1551046-1550905 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 429-609 |
| Cow position: | chr23:35497874-35498048 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 433-610 |
| Cow position: | chr23:11434109-11434283 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 445-613 |
| Cow position: | chr23:6667591-6667438 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 446-606 |
| Cow position: | chr23:30210209-30210363 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 453-613 |
| Cow position: | chr23:40862479-40862318 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 457-610 |
| Cow position: | chr23:35362650-35362804 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 462-571 |
| Cow position: | chr23:7095504-7095611 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 463-613 |
| Cow position: | chr23:29393554-29393406 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 471-609 |
| Cow position: | chr23:40525870-40526008 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 100 |
Show alignments to all cow chromosomes.