Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 131-400 |
| Cow position: | chr24:19588330-19588071 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 372-574 |
| Cow position: | chr24:16481127-16481320 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 377-581 |
| Cow position: | chr24:22939870-22939669 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 377-597 |
| Cow position: | chr24:21041765-21041976 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 378-609 |
| Cow position: | chr24:18786748-18786968 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 378-609 |
| Cow position: | chr24:28279801-28279573 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 378-629 |
| Cow position: | chr24:41458293-41458049 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 101, 87 |
| Conread position: | 380-598 |
| Cow position: | chr24:44074285-44074495 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 175, 11 |
| Conread position: | 382-604 |
| Cow position: | chr24:28335389-28335608 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 382-608 |
| Cow position: | chr24:14746820-14746598 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 383-606 |
| Cow position: | chr24:22888767-22888544 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 194 |
| Conread position: | 390-608 |
| Cow position: | chr24:2143917-2143704 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 391-609 |
| Cow position: | chr24:39742979-39742764 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 394-606 |
| Cow position: | chr24:33290156-33290362 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 160, 109 |
| Conread position: | 394-609 |
| Cow position: | chr24:10546233-10546022 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 395-553 |
| Cow position: | chr24:41332420-41332579 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 397-608 |
| Cow position: | chr24:6507606-6507817 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 159 |
| Conread position: | 398-603 |
| Cow position: | chr24:23176541-23176743 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 398-607 |
| Cow position: | chr24:39350066-39350265 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 398-608 |
| Cow position: | chr24:15617315-15617520 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 398-609 |
| Cow position: | chr24:6427862-6427653 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-610 |
| Cow position: | chr24:42942960-42943173 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-613 |
| Cow position: | chr24:23824273-23824477 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 398-613 |
| Cow position: | chr24:40809208-40809416 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 9 |
| Conread position: | 398-620 |
| Cow position: | chr24:19754737-19754514 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 399-542 |
| Cow position: | chr24:15909780-15909635 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 399-542 |
| Cow position: | chr24:31339008-31338865 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 399-582 |
| Cow position: | chr24:38292014-38291836 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 399-608 |
| Cow position: | chr24:17981343-17981141 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 8 |
| Conread position: | 399-609 |
| Cow position: | chr24:16055354-16055562 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 399-609 |
| Cow position: | chr24:31258181-31258386 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 399-609 |
| Cow position: | chr24:35827902-35827685 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 184 |
| Conread position: | 400-607 |
| Cow position: | chr24:32158118-32158322 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 400-609 |
| Cow position: | chr24:27054565-27054359 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 400-611 |
| Cow position: | chr24:34368850-34369060 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 155, 7 |
| Conread position: | 400-612 |
| Cow position: | chr24:32758605-32758814 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 401-554 |
| Cow position: | chr24:44929506-44929352 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 402-613 |
| Cow position: | chr24:28349739-28349521 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 99 |
| Conread position: | 404-554 |
| Cow position: | chr24:35569326-35569181 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 404-559 |
| Cow position: | chr24:32059304-32059456 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 407-604 |
| Cow position: | chr24:25165186-25164987 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 174 |
| Conread position: | 407-609 |
| Cow position: | chr24:1438121-1438322 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 407-609 |
| Cow position: | chr24:31378899-31378705 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 407-613 |
| Cow position: | chr24:24311653-24311452 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 408-609 |
| Cow position: | chr24:14617808-14617605 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 412-607 |
| Cow position: | chr24:27633545-27633360 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 414-609 |
| Cow position: | chr24:6061238-6061448 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 181 |
| Conread position: | 415-574 |
| Cow position: | chr24:5849233-5849394 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 415-609 |
| Cow position: | chr24:36801519-36801329 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 109 |
| Conread position: | 419-574 |
| Cow position: | chr24:10838024-10837877 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 432-608 |
| Cow position: | chr24:39681979-39681805 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 122 |
| Conread position: | 432-609 |
| Cow position: | chr24:11456711-11456888 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 440-595 |
| Cow position: | chr24:39123959-39123805 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 440-611 |
| Cow position: | chr24:12452902-12452731 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 445-606 |
| Cow position: | chr24:11201534-11201690 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 445-606 |
| Cow position: | chr24:39474290-39474458 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 446-605 |
| Cow position: | chr24:19612119-19611964 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 446-609 |
| Cow position: | chr24:1271777-1271932 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 465-613 |
| Cow position: | chr24:32085837-32085984 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 7, 53 |
| Conread position: | 480-610 |
| Cow position: | chr24:27683379-27683508 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.