Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 198-554 |
| Cow position: | chr25:35295138-35295501 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 178 |
| Conread position: | 357-612 |
| Cow position: | chr25:27534699-27534952 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 391-601 |
| Cow position: | chr25:41093949-41094157 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 391-609 |
| Cow position: | chr25:8511903-8512117 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 79, 133 |
| Conread position: | 392-606 |
| Cow position: | chr25:10748308-10748527 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 6 |
| Conread position: | 392-608 |
| Cow position: | chr25:18000342-18000557 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 395-609 |
| Cow position: | chr25:34970640-34970436 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 395-620 |
| Cow position: | chr25:17701806-17702035 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 396-608 |
| Cow position: | chr25:20076683-20076468 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 12, 186 |
| Conread position: | 396-613 |
| Cow position: | chr25:26457493-26457711 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 81, 181 |
| Conread position: | 397-558 |
| Cow position: | chr25:9109522-9109363 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 100 |
| Conread position: | 397-582 |
| Cow position: | chr25:20614904-20614720 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 397-609 |
| Cow position: | chr25:40956804-40957014 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 79, 99 |
| Conread position: | 397-610 |
| Cow position: | chr25:18448994-18448782 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 398-554 |
| Cow position: | chr25:10204486-10204643 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 398-604 |
| Cow position: | chr25:12932806-12932602 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 398-607 |
| Cow position: | chr25:33246095-33245895 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 398-608 |
| Cow position: | chr25:14075484-14075276 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 157, 9 |
| Conread position: | 398-609 |
| Cow position: | chr25:14570547-14570345 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 398-613 |
| Cow position: | chr25:22575347-22575558 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 157, 98 |
| Conread position: | 399-607 |
| Cow position: | chr25:24405552-24405761 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 181 |
| Conread position: | 399-609 |
| Cow position: | chr25:33204904-33205108 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 399-613 |
| Cow position: | chr25:6178214-6178000 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 400-605 |
| Cow position: | chr25:18239690-18239484 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 400-609 |
| Cow position: | chr25:26240719-26240510 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 178 |
| Conread position: | 400-610 |
| Cow position: | chr25:4716435-4716231 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 404-609 |
| Cow position: | chr25:23410835-23410637 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 127 |
| Conread position: | 407-608 |
| Cow position: | chr25:30021246-30021045 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 149 |
| Conread position: | 407-609 |
| Cow position: | chr25:29312164-29312363 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 407-610 |
| Cow position: | chr25:8576866-8576659 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 407-612 |
| Cow position: | chr25:23248568-23248769 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 148, 164 |
| Conread position: | 408-610 |
| Cow position: | chr25:20624765-20624962 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 69, 54 |
| Conread position: | 413-584 |
| Cow position: | chr25:13800118-13799946 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 414-609 |
| Cow position: | chr25:13560048-13560241 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 414-609 |
| Cow position: | chr25:20811208-20811401 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 415-600 |
| Cow position: | chr25:20884923-20885104 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 415-609 |
| Cow position: | chr25:14466934-14467120 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 180, 24 |
| Conread position: | 417-607 |
| Cow position: | chr25:13562595-13562410 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 49 |
| Conread position: | 424-606 |
| Cow position: | chr25:8080882-8080699 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 433-609 |
| Cow position: | chr25:10011912-10012086 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 433-610 |
| Cow position: | chr25:18161430-18161259 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 445-611 |
| Cow position: | chr25:22909725-22909888 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 447-609 |
| Cow position: | chr25:16691790-16691636 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 458-613 |
| Cow position: | chr25:22542691-22542840 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 466-612 |
| Cow position: | chr25:15358253-15358395 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 98 |
Show alignments to all cow chromosomes.