Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 340-603 |
| Cow position: | chr28:34198864-34199123 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 375-610 |
| Cow position: | chr28:11180954-11181186 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 376-607 |
| Cow position: | chr28:25825654-25825883 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 377-609 |
| Cow position: | chr28:4764084-4763856 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 378-522 |
| Cow position: | chr28:22498587-22498438 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 379-604 |
| Cow position: | chr28:2517613-2517828 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 379-613 |
| Cow position: | chr28:33284906-33285137 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 381-609 |
| Cow position: | chr28:18934660-18934431 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 391-538 |
| Cow position: | chr28:12942644-12942494 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 391-608 |
| Cow position: | chr28:1202052-1202262 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 392-608 |
| Cow position: | chr28:5474838-5475049 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 6 |
| Conread position: | 392-608 |
| Cow position: | chr28:15081733-15081942 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 393-557 |
| Cow position: | chr28:20308287-20308122 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 397-571 |
| Cow position: | chr28:15406244-15406075 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 154, 39 |
| Conread position: | 397-609 |
| Cow position: | chr28:5406732-5406535 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 201, 45 |
| Conread position: | 397-609 |
| Cow position: | chr28:7539968-7540180 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 156, 179 |
| Conread position: | 397-609 |
| Cow position: | chr28:11500703-11500907 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 398-549 |
| Cow position: | chr28:23137847-23138007 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 398-553 |
| Cow position: | chr28:17624982-17625139 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 398-571 |
| Cow position: | chr28:3822953-3823121 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-571 |
| Cow position: | chr28:31373294-31373123 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 142, 41 |
| Conread position: | 398-598 |
| Cow position: | chr28:14508178-14508383 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 183 |
| Conread position: | 398-607 |
| Cow position: | chr28:3769475-3769685 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 398-609 |
| Cow position: | chr28:8789341-8789135 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 398-609 |
| Cow position: | chr28:17362412-17362622 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 398-609 |
| Cow position: | chr28:24500395-24500182 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-610 |
| Cow position: | chr28:31165793-31166006 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 179 |
| Conread position: | 398-613 |
| Cow position: | chr28:33485836-33485611 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 112, 189 |
| Conread position: | 398-630 |
| Cow position: | chr28:1608378-1608144 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 399-607 |
| Cow position: | chr28:6643093-6643302 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 399-609 |
| Cow position: | chr28:19253665-19253460 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 399-610 |
| Cow position: | chr28:23668598-23668805 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 399-613 |
| Cow position: | chr28:4274657-4274866 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 400-578 |
| Cow position: | chr28:3940006-3940188 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 400-584 |
| Cow position: | chr28:19465203-19465389 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 400-613 |
| Cow position: | chr28:6993430-6993636 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 404-601 |
| Cow position: | chr28:23703589-23703392 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 406-613 |
| Cow position: | chr28:12999275-12999071 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 407-556 |
| Cow position: | chr28:22421812-22421955 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 407-613 |
| Cow position: | chr28:25564263-25564058 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 148, 63 |
| Conread position: | 408-613 |
| Cow position: | chr28:9821797-9821991 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 410-609 |
| Cow position: | chr28:9237491-9237295 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 412-589 |
| Cow position: | chr28:11200714-11200883 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 412-613 |
| Cow position: | chr28:15678062-15677858 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 420-612 |
| Cow position: | chr28:20275295-20275104 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 430-604 |
| Cow position: | chr28:25340427-25340255 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 431-608 |
| Cow position: | chr28:8336118-8335940 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 146 |
| Conread position: | 441-607 |
| Cow position: | chr28:21873906-21873739 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 482-609 |
| Cow position: | chr28:13693854-13693732 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.