Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8043P13.5 |
| Conread position: | 36-381 |
| Cow position: | chr29:37626061-37626402 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 6, 38 |
| Conread position: | 363-574 |
| Cow position: | chr29:21012130-21012338 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 372-607 |
| Cow position: | chr29:26129697-26129472 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 373-609 |
| Cow position: | chr29:34699639-34699861 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 379-609 |
| Cow position: | chr29:18963933-18963704 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 383-607 |
| Cow position: | chr29:7663077-7663296 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 98, 24 |
| Conread position: | 384-611 |
| Cow position: | chr29:11071488-11071723 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 387-607 |
| Cow position: | chr29:18073130-18072917 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 387-609 |
| Cow position: | chr29:29559527-29559749 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 389-612 |
| Cow position: | chr29:12451554-12451345 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 212, 29 |
| Conread position: | 390-602 |
| Cow position: | chr29:7637370-7637584 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 89, 49 |
| Conread position: | 391-550 |
| Cow position: | chr29:32080736-32080576 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 391-553 |
| Cow position: | chr29:10206806-10206649 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 391-557 |
| Cow position: | chr29:9662203-9662038 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 391-574 |
| Cow position: | chr29:19607337-19607520 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 391-595 |
| Cow position: | chr29:708943-709149 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 391-603 |
| Cow position: | chr29:29302473-29302682 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 391-609 |
| Cow position: | chr29:7407716-7407928 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 392-544 |
| Cow position: | chr29:42686530-42686683 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 392-595 |
| Cow position: | chr29:10153604-10153811 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 191 |
| Conread position: | 392-610 |
| Cow position: | chr29:5976604-5976814 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 393-554 |
| Cow position: | chr29:7129363-7129522 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 395-608 |
| Cow position: | chr29:26299155-26298946 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 84, 108 |
| Conread position: | 396-570 |
| Cow position: | chr29:23742080-23742254 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 397-529 |
| Cow position: | chr29:34994025-34993893 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 36 |
| Conread position: | 397-607 |
| Cow position: | chr29:11787969-11787772 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 397-609 |
| Cow position: | chr29:942802-942602 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 397-613 |
| Cow position: | chr29:35442279-35442496 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 398-584 |
| Cow position: | chr29:2274662-2274844 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 398-609 |
| Cow position: | chr29:13634118-13634328 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 156, 63 |
| Conread position: | 398-609 |
| Cow position: | chr29:26318035-26317822 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 82, 109 |
| Conread position: | 398-610 |
| Cow position: | chr29:1340963-1340754 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 398-610 |
| Cow position: | chr29:11766897-11766692 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 398-612 |
| Cow position: | chr29:6208242-6208032 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 398-613 |
| Cow position: | chr29:4691206-4691423 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 399-609 |
| Cow position: | chr29:11005911-11005705 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 122, 8 |
| Conread position: | 399-610 |
| Cow position: | chr29:18541228-18541030 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 399-613 |
| Cow position: | chr29:41083322-41083114 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 400-544 |
| Cow position: | chr29:19670-19526 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 400-571 |
| Cow position: | chr29:18021501-18021676 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 91 |
| Conread position: | 400-609 |
| Cow position: | chr29:5616688-5616898 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 400-609 |
| Cow position: | chr29:6772312-6772106 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 400-613 |
| Cow position: | chr29:21186694-21186904 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 117, 7 |
| Conread position: | 404-578 |
| Cow position: | chr29:943000-942816 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 407-607 |
| Cow position: | chr29:37960804-37961002 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 407-611 |
| Cow position: | chr29:19734835-19734639 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 408-608 |
| Cow position: | chr29:22895900-22895698 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 165 |
| Conread position: | 408-609 |
| Cow position: | chr29:7054583-7054390 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 413-607 |
| Cow position: | chr29:40337374-40337565 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 88 |
| Conread position: | 413-609 |
| Cow position: | chr29:14758692-14758888 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 5, 143 |
| Conread position: | 414-608 |
| Cow position: | chr29:4444885-4444689 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 60, 164 |
| Conread position: | 416-609 |
| Cow position: | chr29:26985392-26985197 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 64, 165 |
| Conread position: | 421-611 |
| Cow position: | chr29:16054976-16055159 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 421-615 |
| Cow position: | chr29:19907511-19907320 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 430-609 |
| Cow position: | chr29:13554288-13554111 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 430-613 |
| Cow position: | chr29:25426508-25426688 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 447-597 |
| Cow position: | chr29:18068038-18067890 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 448-610 |
| Cow position: | chr29:25923829-25923991 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 449-607 |
| Cow position: | chr29:18695382-18695225 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 480-609 |
| Cow position: | chr29:32645011-32644882 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 96 |
Show alignments to all cow chromosomes.