Cow genome map

Conread name: Ss1.1-Pig4-TMW8043P13.5

Conread position: 343-591
Cow position: chr6:47192247-47192494 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 64

Conread position: 352-608
Cow position: chr6:4163900-4164153 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 56

Conread position: 367-542
Cow position: chr6:50287524-50287698 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 103, 38

Conread position: 371-548
Cow position: chr6:33985473-33985299 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 374-604
Cow position: chr6:36652665-36652439 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 102, 20

Conread position: 374-608
Cow position: chr6:9026758-9026537 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 99, 17

Conread position: 377-606
Cow position: chr6:30160563-30160341 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 175, 0

Conread position: 378-601
Cow position: chr6:15943758-15943980 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 95, 28

Conread position: 378-608
Cow position: chr6:51294526-51294298 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 98, 29

Conread position: 380-609
Cow position: chr6:40410-40637 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 169, 33

Conread position: 390-574
Cow position: chr6:37612339-37612153 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 177

Conread position: 391-607
Cow position: chr6:48572653-48572866 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 85, 16

Conread position: 391-613
Cow position: chr6:50034502-50034718 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 10, 40

Conread position: 391-623
Cow position: chr6:59496446-59496217 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 86, 39

Conread position: 392-584
Cow position: chr6:11790207-11790011 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 183

Conread position: 392-612
Cow position: chr6:31564103-31564327 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 97

Conread position: 392-613
Cow position: chr6:38453550-38453762 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 16, 46

Conread position: 393-615
Cow position: chr6:20255177-20255407 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 83, 182

Conread position: 394-607
Cow position: chr6:53674087-53673878 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 161, 12

Conread position: 394-614
Cow position: chr6:24622753-24622966 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 10

Conread position: 395-577
Cow position: chr6:28810779-28810955 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 121, 19

Conread position: 395-624
Cow position: chr6:41042143-41041925 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 396-609
Cow position: chr6:38018483-38018274 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 159, 80

Conread position: 396-609
Cow position: chr6:43760578-43760380 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 81, 11

Conread position: 397-555
Cow position: chr6:31225931-31225773 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 79, 9

Conread position: 397-569
Cow position: chr6:24650067-24649897 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 80, 10

Conread position: 397-599
Cow position: chr6:15782289-15782492 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 79, 180

Conread position: 397-599
Cow position: chr6:56376128-56376326 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 158, 10

Conread position: 397-603
Cow position: chr6:28795559-28795355 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 42

Conread position: 397-613
Cow position: chr6:19427671-19427465 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 80, 45

Conread position: 397-658
Cow position: chr6:53264576-53264842 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 80, 42

Conread position: 398-553
Cow position: chr6:28278896-28278745 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 398-559
Cow position: chr6:22863044-22863198 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 78, 9

Conread position: 398-576
Cow position: chr6:7707358-7707178 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 398-581
Cow position: chr6:38594017-38594196 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 157, 9

Conread position: 398-596
Cow position: chr6:16219834-16220035 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 142

Conread position: 398-606
Cow position: chr6:51840510-51840294 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 194

Conread position: 398-607
Cow position: chr6:33917615-33917826 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 73, 9

Conread position: 398-608
Cow position: chr6:56860763-56860560 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 125, 41

Conread position: 398-609
Cow position: chr6:6994735-6994939 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 72, 9

Conread position: 398-609
Cow position: chr6:41655812-41656030 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 68, 97

Conread position: 398-609
Cow position: chr6:55475480-55475267 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 68, 183

Conread position: 398-611
Cow position: chr6:20754078-20754291 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 15

Conread position: 398-611
Cow position: chr6:31425335-31425550 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 77, 39

Conread position: 398-612
Cow position: chr6:4023326-4023112 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 78, 184

Conread position: 398-613
Cow position: chr6:6367449-6367658 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 51

Conread position: 398-613
Cow position: chr6:6943463-6943671 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 157, 9

Conread position: 398-613
Cow position: chr6:24545837-24545622 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 78, 9

Conread position: 398-614
Cow position: chr6:2324000-2324214 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 72, 57

Conread position: 398-615
Cow position: chr6:37054208-37053996 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 144, 0

Conread position: 398-641
Cow position: chr6:52705356-52705594 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 78, 9

Conread position: 399-549
Cow position: chr6:60423119-60423268 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 399-553
Cow position: chr6:47624664-47624813 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 399-590
Cow position: chr6:28165047-28164854 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 78, 8

Conread position: 399-606
Cow position: chr6:827485-827687 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 80, 8

Conread position: 399-608
Cow position: chr6:47026699-47026490 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 77, 8

Conread position: 399-613
Cow position: chr6:32412418-32412626 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 82, 51

Conread position: 400-597
Cow position: chr6:35774761-35774958 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 70, 7

Conread position: 400-606
Cow position: chr6:13718986-13718779 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 7

Conread position: 400-607
Cow position: chr6:24222937-24223140 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 79, 7

Conread position: 400-609
Cow position: chr6:24583012-24583209 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 170
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 77, 19

Conread position: 407-575
Cow position: chr6:36892118-36892284 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 89

Conread position: 407-611
Cow position: chr6:41679296-41679096 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 70, 83

Conread position: 407-613
Cow position: chr6:510089-510294 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 148, 91

Conread position: 408-585
Cow position: chr6:32809724-32809549 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 147, 65

Conread position: 408-599
Cow position: chr6:17534304-17534491 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 147, 104

Conread position: 408-606
Cow position: chr6:53939178-53938979 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 53

Conread position: 408-608
Cow position: chr6:47858504-47858304 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 87

Conread position: 408-609
Cow position: chr6:24558092-24557897 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 132, 0

Conread position: 409-613
Cow position: chr6:7173547-7173741 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 105, 21

Conread position: 409-613
Cow position: chr6:38914654-38914452 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 65, 139

Conread position: 412-610
Cow position: chr6:46676221-46676416 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 10

Conread position: 413-609
Cow position: chr6:54144512-54144321 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 64, 140

Conread position: 413-612
Cow position: chr6:32277151-32276955 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 25

Conread position: 413-613
Cow position: chr6:52002561-52002368 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 414-585
Cow position: chr6:15754049-15753878 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 141, 25

Conread position: 415-611
Cow position: chr6:10237541-10237348 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 60, 138

Conread position: 416-545
Cow position: chr6:1907726-1907596 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 417-613
Cow position: chr6:32798670-32798862 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 13

Conread position: 418-609
Cow position: chr6:1890373-1890564 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 139

Conread position: 419-584
Cow position: chr6:7498266-7498423 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 51, 20

Conread position: 425-609
Cow position: chr6:59588211-59588391 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 55

Conread position: 428-609
Cow position: chr6:18582621-18582795 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 68

Conread position: 430-574
Cow position: chr6:29649298-29649152 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 430-603
Cow position: chr6:57118749-57118923 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 39

Conread position: 430-613
Cow position: chr6:16733607-16733428 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 41, 91

Conread position: 440-609
Cow position: chr6:60503560-60503393 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 56

Conread position: 445-608
Cow position: chr6:44371763-44371931 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 43

Conread position: 445-609
Cow position: chr6:29412611-29412771 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 108

Conread position: 445-611
Cow position: chr6:18469056-18469216 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 163, 50

Conread position: 457-614
Cow position: chr6:2583025-2582867 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 120

Conread position: 468-605
Cow position: chr6:51387904-51387765 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 113

Conread position: 468-613
Cow position: chr6:7836069-7835927 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 82

Show alignments to all cow chromosomes.