Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8044J10.3 |
| Conread position: | 787-1061 |
| Cow position: | chr10:26190432-26190152 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 801-1092 |
| Cow position: | chr10:9465068-9465360 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 43, 107 |
| Conread position: | 802-1077 |
| Cow position: | chr10:33882300-33882033 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 804-992 |
| Cow position: | chr10:1947796-1947605 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 819-999 |
| Cow position: | chr10:39470569-39470381 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 819-1040 |
| Cow position: | chr10:28205611-28205384 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 819-1092 |
| Cow position: | chr10:41142497-41142780 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 820-1090 |
| Cow position: | chr10:11445136-11445415 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 252 |
| Conread position: | 824-1006 |
| Cow position: | chr10:35879431-35879250 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 846-1043 |
| Cow position: | chr10:46083877-46084078 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 846-1072 |
| Cow position: | chr10:2348821-2348589 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 846-1073 |
| Cow position: | chr10:49554090-49554317 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 59 |
| Conread position: | 847-1038 |
| Cow position: | chr10:26686386-26686196 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 847-1060 |
| Cow position: | chr10:63556164-63555966 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 851-1038 |
| Cow position: | chr10:54309575-54309766 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 868-1092 |
| Cow position: | chr10:9063547-9063777 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 881-1009 |
| Cow position: | chr10:52747956-52748090 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 881-1014 |
| Cow position: | chr10:8079431-8079293 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1052 |
| Cow position: | chr10:13787719-13787543 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 881-1059 |
| Cow position: | chr10:18322057-18322230 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 881-1061 |
| Cow position: | chr10:9087450-9087632 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 881-1072 |
| Cow position: | chr10:47342357-47342551 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1073 |
| Cow position: | chr10:28252145-28251955 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 881-1078 |
| Cow position: | chr10:57754219-57754410 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr10:804346-804547 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr10:5110536-5110733 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 881-1080 |
| Cow position: | chr10:68514491-68514693 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 881-1081 |
| Cow position: | chr10:27263012-27262808 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 881-1082 |
| Cow position: | chr10:65710647-65710851 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 81, 173 |
| Conread position: | 881-1090 |
| Cow position: | chr10:55844170-55843958 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 881-1091 |
| Cow position: | chr10:17229803-17229591 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 881-1091 |
| Cow position: | chr10:17963102-17963314 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 136, 24 |
| Conread position: | 881-1091 |
| Cow position: | chr10:32617613-32617823 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 881-1091 |
| Cow position: | chr10:62625925-62625715 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 881-1092 |
| Cow position: | chr10:37102658-37102449 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 881-1092 |
| Cow position: | chr10:39482883-39483095 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 882-1079 |
| Cow position: | chr10:39065929-39066118 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 883-1080 |
| Cow position: | chr10:46741943-46742140 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 883-1082 |
| Cow position: | chr10:39511440-39511635 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 886-1092 |
| Cow position: | chr10:26812285-26812495 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 891-1080 |
| Cow position: | chr10:62846604-62846795 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 894-1081 |
| Cow position: | chr10:39410376-39410570 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 900-1092 |
| Cow position: | chr10:1204516-1204704 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 906-1080 |
| Cow position: | chr10:23368153-23368329 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 923-1090 |
| Cow position: | chr10:58240638-58240801 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 160, 27 |
| Conread position: | 939-1092 |
| Cow position: | chr10:20544776-20544620 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 942-1092 |
| Cow position: | chr10:19180575-19180722 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 942-1092 |
| Cow position: | chr10:34705017-34705162 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 34 |
| Conread position: | 944-1073 |
| Cow position: | chr10:30400556-30400684 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 946-1092 |
| Cow position: | chr10:4933162-4933309 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 975-1092 |
| Cow position: | chr10:48734780-48734662 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.