Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8044J10.3 |
| Conread position: | 804-1064 |
| Cow position: | chr11:40481282-40481024 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 820-1080 |
| Cow position: | chr11:22517314-22517589 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 851-1080 |
| Cow position: | chr11:52155911-52155683 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 860-1092 |
| Cow position: | chr11:29575859-29575630 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 871-1080 |
| Cow position: | chr11:79929352-79929146 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 871-1081 |
| Cow position: | chr11:49707048-49706840 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 874-1090 |
| Cow position: | chr11:63175694-63175906 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 881-1072 |
| Cow position: | chr11:32253662-32253857 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 881-1073 |
| Cow position: | chr11:60676817-60677007 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 53, 117 |
| Conread position: | 881-1073 |
| Cow position: | chr11:70517942-70517739 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 881-1079 |
| Cow position: | chr11:59458074-59457864 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 881-1079 |
| Cow position: | chr11:72854163-72854364 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 881-1080 |
| Cow position: | chr11:41233054-41233257 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr11:60967619-60967426 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr11:81578614-81578815 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 881-1081 |
| Cow position: | chr11:3754781-3754987 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 881-1081 |
| Cow position: | chr11:30368922-30369118 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 881-1081 |
| Cow position: | chr11:35466974-35467170 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 881-1081 |
| Cow position: | chr11:62731049-62730843 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 881-1081 |
| Cow position: | chr11:73360343-73360133 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 881-1090 |
| Cow position: | chr11:6707814-6708017 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 178, 26 |
| Conread position: | 881-1090 |
| Cow position: | chr11:20587064-20586856 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 881-1090 |
| Cow position: | chr11:35277757-35277959 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 881-1090 |
| Cow position: | chr11:47644703-47644915 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 881-1091 |
| Cow position: | chr11:37632470-37632260 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr11:26288006-26288227 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 882-1052 |
| Cow position: | chr11:29832904-29833074 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 882-1060 |
| Cow position: | chr11:41400627-41400440 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 157 |
| Conread position: | 883-1067 |
| Cow position: | chr11:75270203-75270013 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 885-1079 |
| Cow position: | chr11:75396881-75397069 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 887-1081 |
| Cow position: | chr11:38992858-38993049 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 888-1058 |
| Cow position: | chr11:17516946-17517121 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 891-1082 |
| Cow position: | chr11:48098195-48098002 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 892-1081 |
| Cow position: | chr11:64459770-64459583 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 892-1092 |
| Cow position: | chr11:62478331-62478540 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 893-1091 |
| Cow position: | chr11:10281830-10281631 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 893-1092 |
| Cow position: | chr11:80925514-80925314 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 894-1080 |
| Cow position: | chr11:26278127-26277940 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 895-1092 |
| Cow position: | chr11:56671787-56671591 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 897-1061 |
| Cow position: | chr11:8478334-8478174 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 900-1073 |
| Cow position: | chr11:6271182-6271006 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 901-1080 |
| Cow position: | chr11:32362603-32362787 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 915-1090 |
| Cow position: | chr11:15510718-15510541 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 915-1092 |
| Cow position: | chr11:55709581-55709402 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 136 |
| Conread position: | 942-1078 |
| Cow position: | chr11:1886396-1886529 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 942-1078 |
| Cow position: | chr11:40453434-40453296 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 942-1090 |
| Cow position: | chr11:82551386-82551530 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 942-1092 |
| Cow position: | chr11:5233256-5233405 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 942-1092 |
| Cow position: | chr11:35018649-35018800 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 946-1092 |
| Cow position: | chr11:34934527-34934380 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 951-1081 |
| Cow position: | chr11:12310913-12310784 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 8 |
Show alignments to all cow chromosomes.