Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8044J10.3 |
| Conread position: | 804-943 |
| Cow position: | chr13:34585944-34586080 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 804-1081 |
| Cow position: | chr13:33627955-33627673 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 805-1080 |
| Cow position: | chr13:18850780-18850504 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 805-1092 |
| Cow position: | chr13:31841684-31841956 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 813-975 |
| Cow position: | chr13:14176725-14176888 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 816-1070 |
| Cow position: | chr13:44586398-44586147 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 816-1073 |
| Cow position: | chr13:34080296-34080552 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 820-1080 |
| Cow position: | chr13:48964418-48964161 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 834-1081 |
| Cow position: | chr13:20296720-20296970 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 846-1079 |
| Cow position: | chr13:14527711-14527941 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 170, 11 |
| Conread position: | 858-1081 |
| Cow position: | chr13:26210704-26210476 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 871-1073 |
| Cow position: | chr13:55778573-55778370 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 872-1092 |
| Cow position: | chr13:17112449-17112225 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 879-1089 |
| Cow position: | chr13:58440998-58440788 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 881-1015 |
| Cow position: | chr13:49623986-49623850 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 881-1059 |
| Cow position: | chr13:20092164-20091991 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 881-1070 |
| Cow position: | chr13:21292434-21292245 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 881-1073 |
| Cow position: | chr13:1165671-1165478 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 881-1073 |
| Cow position: | chr13:11263215-11263406 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1077 |
| Cow position: | chr13:16136308-16136505 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 881-1078 |
| Cow position: | chr13:45230309-45230110 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 881-1079 |
| Cow position: | chr13:42599146-42598945 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 881-1081 |
| Cow position: | chr13:56916149-56916349 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 881-1089 |
| Cow position: | chr13:26484817-26484604 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 881-1090 |
| Cow position: | chr13:21042301-21042082 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 881-1090 |
| Cow position: | chr13:39745601-39745812 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr13:505431-505210 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 881-1092 |
| Cow position: | chr13:3164934-3164720 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr13:6639836-6640055 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr13:15371892-15371683 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 202, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr13:42370483-42370684 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 190, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr13:50531972-50531753 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 883-1090 |
| Cow position: | chr13:31860325-31860124 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 884-1078 |
| Cow position: | chr13:14824939-14824742 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 886-1081 |
| Cow position: | chr13:55817832-55817636 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 887-1090 |
| Cow position: | chr13:4184485-4184281 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 898-1092 |
| Cow position: | chr13:47295587-47295392 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 904-1073 |
| Cow position: | chr13:45171506-45171673 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 905-1079 |
| Cow position: | chr13:34082410-34082238 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 910-1081 |
| Cow position: | chr13:42341608-42341781 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 935-1081 |
| Cow position: | chr13:41328112-41328253 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 937-1092 |
| Cow position: | chr13:6187057-6186906 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 148, 43 |
Show alignments to all cow chromosomes.