Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8044J10.3 |
| Conread position: | 804-921 |
| Cow position: | chr3:24786299-24786181 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 103 |
| Conread position: | 804-1051 |
| Cow position: | chr3:44897976-44898223 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 807-1072 |
| Cow position: | chr3:77660435-77660190 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 807-1081 |
| Cow position: | chr3:3608914-3609174 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 816-1081 |
| Cow position: | chr3:52691156-52691420 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 823-1092 |
| Cow position: | chr3:41734856-41735119 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 841-1080 |
| Cow position: | chr3:72592906-72592675 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 846-988 |
| Cow position: | chr3:64552157-64552011 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 846-1073 |
| Cow position: | chr3:32349117-32349339 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 846-1091 |
| Cow position: | chr3:14811312-14811549 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 849-1054 |
| Cow position: | chr3:8021810-8021619 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 852-1061 |
| Cow position: | chr3:8440017-8440234 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 878-1052 |
| Cow position: | chr3:18351146-18350976 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 109, 26 |
| Conread position: | 881-1015 |
| Cow position: | chr3:62021804-62021667 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 881-1038 |
| Cow position: | chr3:59628126-59627967 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 881-1052 |
| Cow position: | chr3:1022173-1022342 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 881-1061 |
| Cow position: | chr3:53245936-53245753 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 881-1070 |
| Cow position: | chr3:53132462-53132646 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 881-1073 |
| Cow position: | chr3:38333520-38333323 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 881-1073 |
| Cow position: | chr3:64079697-64079502 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 881-1079 |
| Cow position: | chr3:33614494-33614691 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 881-1079 |
| Cow position: | chr3:60284247-60284045 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 881-1080 |
| Cow position: | chr3:32764491-32764299 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 881-1080 |
| Cow position: | chr3:42030142-42030328 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 881-1080 |
| Cow position: | chr3:75619007-75618813 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr3:84020123-84020319 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 881-1081 |
| Cow position: | chr3:8529084-8528885 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 881-1081 |
| Cow position: | chr3:47471259-47471060 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 143, 24 |
| Conread position: | 881-1084 |
| Cow position: | chr3:15566473-15566677 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 881-1089 |
| Cow position: | chr3:53193047-53193262 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1090 |
| Cow position: | chr3:73154892-73155105 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr3:9431220-9431431 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 881-1092 |
| Cow position: | chr3:9631533-9631317 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 881-1092 |
| Cow position: | chr3:26382325-26382114 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr3:74227701-74227921 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 882-1090 |
| Cow position: | chr3:72915349-72915139 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 883-1073 |
| Cow position: | chr3:59577556-59577360 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 883-1073 |
| Cow position: | chr3:83233570-83233385 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 884-1092 |
| Cow position: | chr3:58637162-58637362 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 885-1073 |
| Cow position: | chr3:34591433-34591607 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 887-1080 |
| Cow position: | chr3:39977018-39976826 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 893-1073 |
| Cow position: | chr3:28560882-28561064 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 893-1086 |
| Cow position: | chr3:29125188-29124999 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 895-1081 |
| Cow position: | chr3:4485734-4485546 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 899-1051 |
| Cow position: | chr3:44895776-44895621 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 122 |
| Conread position: | 906-1079 |
| Cow position: | chr3:50594026-50594202 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 908-1092 |
| Cow position: | chr3:65385479-65385294 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 931-1092 |
| Cow position: | chr3:19103628-19103791 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 948-1080 |
| Cow position: | chr3:55474066-55473938 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 948-1090 |
| Cow position: | chr3:22209115-22209260 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 950-1092 |
| Cow position: | chr3:45635100-45635243 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 957-1073 |
| Cow position: | chr3:37835925-37836041 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 964-1092 |
| Cow position: | chr3:3794221-3794092 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
Show alignments to all cow chromosomes.