Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8044J10.3 |
| Conread position: | 783-1072 |
| Cow position: | chr5:54692776-54693069 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 163 |
| Conread position: | 804-1092 |
| Cow position: | chr5:45945815-45946088 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 818-1092 |
| Cow position: | chr5:75147831-75148113 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 819-1081 |
| Cow position: | chr5:21783015-21782748 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 820-1038 |
| Cow position: | chr5:20910797-20910572 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 844-1052 |
| Cow position: | chr5:50488342-50488126 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 846-1052 |
| Cow position: | chr5:4138033-4138230 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 846-1052 |
| Cow position: | chr5:47304893-47304700 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 846-1052 |
| Cow position: | chr5:74587342-74587139 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 846-1079 |
| Cow position: | chr5:25398885-25398649 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 853-1081 |
| Cow position: | chr5:21949972-21949734 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 864-1052 |
| Cow position: | chr5:60736401-60736209 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 871-1090 |
| Cow position: | chr5:8240210-8240437 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 873-1070 |
| Cow position: | chr5:373444-373249 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 874-1091 |
| Cow position: | chr5:28813764-28813543 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 881-1051 |
| Cow position: | chr5:28860458-28860626 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 881-1059 |
| Cow position: | chr5:71726026-71726209 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 881-1068 |
| Cow position: | chr5:36808442-36808255 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 881-1070 |
| Cow position: | chr5:65093035-65093231 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1079 |
| Cow position: | chr5:30622133-30622339 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 145 |
| Conread position: | 881-1080 |
| Cow position: | chr5:25730288-25730087 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr5:38398238-38398037 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 881-1080 |
| Cow position: | chr5:54892079-54892265 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 881-1080 |
| Cow position: | chr5:58370997-58371190 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 881-1081 |
| Cow position: | chr5:32134045-32134238 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 881-1086 |
| Cow position: | chr5:35612541-35612334 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 881-1090 |
| Cow position: | chr5:20957219-20957012 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 881-1091 |
| Cow position: | chr5:29513488-29513691 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 881-1091 |
| Cow position: | chr5:29739555-29739767 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr5:48398674-48398891 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 881-1092 |
| Cow position: | chr5:53629744-53629960 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 881-1092 |
| Cow position: | chr5:67647389-67647599 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr5:71595291-71595081 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 202, 24 |
| Conread position: | 882-1092 |
| Cow position: | chr5:31524301-31524508 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 883-1079 |
| Cow position: | chr5:35448614-35448812 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 883-1090 |
| Cow position: | chr5:51729185-51729392 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 885-1070 |
| Cow position: | chr5:12177748-12177560 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 887-1073 |
| Cow position: | chr5:14303790-14303605 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 894-1092 |
| Cow position: | chr5:50958115-50957909 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 896-1091 |
| Cow position: | chr5:34903879-34904076 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 904-1073 |
| Cow position: | chr5:47761186-47761360 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 904-1073 |
| Cow position: | chr5:62106550-62106722 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 910-1091 |
| Cow position: | chr5:28410346-28410162 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 942-1080 |
| Cow position: | chr5:54393073-54392937 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 942-1092 |
| Cow position: | chr5:30348703-30348555 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 942-1092 |
| Cow position: | chr5:59245387-59245538 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 946-1090 |
| Cow position: | chr5:66878835-66878694 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 129, 77 |
| Conread position: | 950-1073 |
| Cow position: | chr5:9220262-9220139 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.