Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8044J10.3 |
| Conread position: | 610-770 |
| Cow position: | chr6:23627713-23627872 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 795-1007 |
| Cow position: | chr6:57793569-57793356 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 802-1090 |
| Cow position: | chr6:661796-662087 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 804-1077 |
| Cow position: | chr6:18574112-18574381 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 820-977 |
| Cow position: | chr6:29449177-29449339 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 820-997 |
| Cow position: | chr6:17725876-17726056 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 846-998 |
| Cow position: | chr6:28995555-28995405 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 97, 61 |
| Conread position: | 846-1080 |
| Cow position: | chr6:51082544-51082780 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 871-1090 |
| Cow position: | chr6:1438073-1437861 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 209, 34 |
| Conread position: | 873-1079 |
| Cow position: | chr6:6382452-6382662 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 873-1092 |
| Cow position: | chr6:53392302-53392079 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 874-1090 |
| Cow position: | chr6:11755577-11755794 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 880-1091 |
| Cow position: | chr6:1840689-1840472 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 881-1050 |
| Cow position: | chr6:57370354-57370527 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 881-1072 |
| Cow position: | chr6:12499562-12499754 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 138 |
| Conread position: | 881-1072 |
| Cow position: | chr6:14634587-14634777 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 881-1078 |
| Cow position: | chr6:9821253-9821449 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 881-1078 |
| Cow position: | chr6:49494250-49494049 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 881-1078 |
| Cow position: | chr6:67793436-67793631 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 881-1080 |
| Cow position: | chr6:6348630-6348427 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 17, 105 |
| Conread position: | 881-1080 |
| Cow position: | chr6:35235963-35236164 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr6:38791210-38791010 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 881-1080 |
| Cow position: | chr6:44703924-44703717 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 881-1081 |
| Cow position: | chr6:12849884-12850086 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 881-1081 |
| Cow position: | chr6:62096178-62096373 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr6:8140367-8140156 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 881-1092 |
| Cow position: | chr6:9416437-9416222 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 47, 150 |
| Conread position: | 881-1092 |
| Cow position: | chr6:35273795-35273582 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 881-1092 |
| Cow position: | chr6:49221631-49221842 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 885-1092 |
| Cow position: | chr6:46657575-46657366 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 890-1086 |
| Cow position: | chr6:4514006-4513810 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 892-1081 |
| Cow position: | chr6:28182047-28181854 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 893-1090 |
| Cow position: | chr6:3559366-3559165 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 900-1073 |
| Cow position: | chr6:57498546-57498369 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 900-1081 |
| Cow position: | chr6:52922272-52922085 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 902-1081 |
| Cow position: | chr6:5561390-5561572 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 917-1081 |
| Cow position: | chr6:51028115-51027954 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 933-1038 |
| Cow position: | chr6:56341338-56341442 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.