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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8044K22.5.5
        

               
Conread position:
               
777-984
               

               
Cow position:
               
chr29:6813099-6813299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
820-1299
               

               
Cow position:
               
chr29:20933398-20933895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 244
               

               
Conread position:
               
826-1066
               

               
Cow position:
               
chr29:38247044-38246795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
826-1333
               

               
Cow position:
               
chr29:34360098-34359609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
827-1123
               

               
Cow position:
               
chr29:3502760-3503060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
827-1331
               

               
Cow position:
               
chr29:4492337-4491842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
34, 126
               

               
Conread position:
               
828-1107
               

               
Cow position:
               
chr29:38261555-38261265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
130, 15
               

               
Conread position:
               
830-954
               

               
Cow position:
               
chr29:26415806-26415929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
830-1332
               

               
Cow position:
               
chr29:22162552-22162049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
831-982
               

               
Cow position:
               
chr29:34530146-34530296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
831-989
               

               
Cow position:
               
chr29:133895-134057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
831-1116
               

               
Cow position:
               
chr29:24033500-24033796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 254
               

               
Conread position:
               
831-1212
               

               
Cow position:
               
chr29:15940935-15940537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 186
               

               
Conread position:
               
831-1339
               

               
Cow position:
               
chr29:21196945-21196433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 64
               

               
Conread position:
               
831-1344
               

               
Cow position:
               
chr29:35434575-35435083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
143, 268
               

               
Conread position:
               
832-1020
               

               
Cow position:
               
chr29:4087574-4087386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
146, 26
               

               
Conread position:
               
832-1041
               

               
Cow position:
               
chr29:9332850-9333052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
126, 152
               

               
Conread position:
               
832-1067
               

               
Cow position:
               
chr29:3460527-3460773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
832-1246
               

               
Cow position:
               
chr29:12309703-12310135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
132, 63
               

               
Conread position:
               
832-1343
               

               
Cow position:
               
chr29:961625-962127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
148, 211
               

               
Conread position:
               
833-1154
               

               
Cow position:
               
chr29:12005056-12004727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
833-1216
               

               
Cow position:
               
chr29:9638604-9638223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 8
               

               
Conread position:
               
834-981
               

               
Cow position:
               
chr29:29632229-29632082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
834-1116
               

               
Cow position:
               
chr29:9078865-9078575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
153, 131
               

               
Conread position:
               
834-1134
               

               
Cow position:
               
chr29:43312087-43311777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
834-1192
               

               
Cow position:
               
chr29:28883788-28884154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
149, 126
               

               
Conread position:
               
834-1245
               

               
Cow position:
               
chr29:17409042-17409459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
834-1285
               

               
Cow position:
               
chr29:21443636-21443170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 384
               

               
Conread position:
               
834-1315
               

               
Cow position:
               
chr29:34745946-34745465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 56
               

               
Conread position:
               
834-1337
               

               
Cow position:
               
chr29:4875195-4874672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 387
               

               
Conread position:
               
836-1045
               

               
Cow position:
               
chr29:37719622-37719837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 63
               

               
Conread position:
               
836-1343
               

               
Cow position:
               
chr29:15738634-15738123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
147, 78
               

               
Conread position:
               
838-1106
               

               
Cow position:
               
chr29:479097-479371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 149
               

               
Conread position:
               
838-1344
               

               
Cow position:
               
chr29:18878788-18878256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
839-1185
               

               
Cow position:
               
chr29:2071855-2071505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
839-1338
               

               
Cow position:
               
chr29:32799994-32799486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 119
               

               
Conread position:
               
840-1335
               

               
Cow position:
               
chr29:1325154-1325662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
841-965
               

               
Cow position:
               
chr29:36329193-36329319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
841-989
               

               
Cow position:
               
chr29:30433394-30433543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
841-1109
               

               
Cow position:
               
chr29:2415096-2414820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
841-1116
               

               
Cow position:
               
chr29:8125878-8125591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
841-1181
               

               
Cow position:
               
chr29:26771156-26771501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
841-1216
               

               
Cow position:
               
chr29:19907071-19907451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 81
               

               
Conread position:
               
841-1277
               

               
Cow position:
               
chr29:28775739-28775305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 54
               

               
Conread position:
               
841-1303
               

               
Cow position:
               
chr29:26017796-26017316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 74
               

               
Conread position:
               
841-1316
               

               
Cow position:
               
chr29:40117282-40117762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
841-1320
               

               
Cow position:
               
chr29:699894-699427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
136, 41
               

               
Conread position:
               
841-1338
               

               
Cow position:
               
chr29:45005901-45005412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 55
               

               
Conread position:
               
842-940
               

               
Cow position:
               
chr29:41347263-41347361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
842-957
               

               
Cow position:
               
chr29:29171351-29171466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
842-981
               

               
Cow position:
               
chr29:7560685-7560547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
842-981
               

               
Cow position:
               
chr29:34552168-34552306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
842-982
               

               
Cow position:
               
chr29:5425909-5425769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
842-985
               

               
Cow position:
               
chr29:1582910-1582768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
842-985
               

               
Cow position:
               
chr29:45588759-45588618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 118
               

               
Conread position:
               
842-993
               

               
Cow position:
               
chr29:15289456-15289608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
842-995
               

               
Cow position:
               
chr29:5897013-5896859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
842-1008
               

               
Cow position:
               
chr29:38910288-38910125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
842-1018
               

               
Cow position:
               
chr29:29066142-29066325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
842-1018
               

               
Cow position:
               
chr29:40960202-40960026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 117
               

               
Conread position:
               
842-1035
               

               
Cow position:
               
chr29:40903003-40902804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
842-1039
               

               
Cow position:
               
chr29:43252971-43252766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
842-1043
               

               
Cow position:
               
chr29:686475-686262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 53
               

               
Conread position:
               
842-1045
               

               
Cow position:
               
chr29:26519745-26519535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
842-1064
               

               
Cow position:
               
chr29:28990661-28990891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
842-1066
               

               
Cow position:
               
chr29:8630358-8630124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
842-1067
               

               
Cow position:
               
chr29:2308996-2309228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 43
               

               
Conread position:
               
842-1067
               

               
Cow position:
               
chr29:30028715-30028476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
842-1068
               

               
Cow position:
               
chr29:14888837-14889075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
842-1080
               

               
Cow position:
               
chr29:8164147-8163895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
842-1089
               

               
Cow position:
               
chr29:528574-528316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 240
               

               
Conread position:
               
842-1089
               

               
Cow position:
               
chr29:19619323-19619065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
143, 240
               

               
Conread position:
               
842-1094
               

               
Cow position:
               
chr29:23119661-23119397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
842-1096
               

               
Cow position:
               
chr29:18781582-18781841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 51
               

               
Conread position:
               
842-1098
               

               
Cow position:
               
chr29:14207306-14207037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
145, 244
               

               
Conread position:
               
842-1099
               

               
Cow position:
               
chr29:4201835-4202107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
842-1103
               

               
Cow position:
               
chr29:15401040-15400769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 76
               

               
Conread position:
               
842-1106
               

               
Cow position:
               
chr29:28689326-28689601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
141, 241
               

               
Conread position:
               
842-1106
               

               
Cow position:
               
chr29:43327739-43328013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
141, 223
               

               
Conread position:
               
842-1107
               

               
Cow position:
               
chr29:756687-756412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 260
               

               
Conread position:
               
842-1107
               

               
Cow position:
               
chr29:20462901-20462632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 254
               

               
Conread position:
               
842-1107
               

               
Cow position:
               
chr29:38410145-38410425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
842-1117
               

               
Cow position:
               
chr29:12798648-12798919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
842-1128
               

               
Cow position:
               
chr29:30707832-30707547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
160, 141
               

               
Conread position:
               
842-1130
               

               
Cow position:
               
chr29:3972835-3972547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
55, 205
               

               
Conread position:
               
842-1131
               

               
Cow position:
               
chr29:18364667-18364393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
842-1131
               

               
Cow position:
               
chr29:26734749-26735041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 172
               

               
Conread position:
               
842-1137
               

               
Cow position:
               
chr29:18561081-18560776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
142, 210
               

               
Conread position:
               
842-1137
               

               
Cow position:
               
chr29:44901986-44901686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
842-1155
               

               
Cow position:
               
chr29:6775274-6774961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
48, 207
               

               
Conread position:
               
842-1175
               

               
Cow position:
               
chr29:3704487-3704142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
842-1183
               

               
Cow position:
               
chr29:45589869-45589524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
842-1186
               

               
Cow position:
               
chr29:6925738-6926072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
842-1186
               

               
Cow position:
               
chr29:26263571-26263903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 39
               

               
Conread position:
               
842-1186
               

               
Cow position:
               
chr29:40337812-40337470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
842-1187
               

               
Cow position:
               
chr29:35484960-35485314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
137, 258
               

               
Conread position:
               
842-1226
               

               
Cow position:
               
chr29:39567402-39567788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
842-1236
               

               
Cow position:
               
chr29:22935997-22936386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
167, 46
               

               
Conread position:
               
842-1237
               

               
Cow position:
               
chr29:13127394-13127003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
842-1246
               

               
Cow position:
               
chr29:7666313-7665888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
842-1248
               

               
Cow position:
               
chr29:10156573-10156179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
842-1248
               

               
Cow position:
               
chr29:32290318-32290735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
124, 264
               

               
Conread position:
               
842-1249
               

               
Cow position:
               
chr29:6844913-6844504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 53
               

               
Conread position:
               
842-1251
               

               
Cow position:
               
chr29:17607132-17607547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 202
               

               
Conread position:
               
842-1278
               

               
Cow position:
               
chr29:856687-856241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
842-1295
               

               
Cow position:
               
chr29:10456836-10456404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
842-1297
               

               
Cow position:
               
chr29:40096681-40097134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
144, 51
               

               
Conread position:
               
842-1299
               

               
Cow position:
               
chr29:36586296-36586749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
842-1299
               

               
Cow position:
               
chr29:38581685-38582150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
842-1303
               

               
Cow position:
               
chr29:35406078-35405606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
116, 261
               

               
Conread position:
               
842-1313
               

               
Cow position:
               
chr29:24952402-24952881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
842-1318
               

               
Cow position:
               
chr29:36530579-36531065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 397
               

               
Conread position:
               
842-1319
               

               
Cow position:
               
chr29:28197292-28196820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 172
               

               
Conread position:
               
842-1320
               

               
Cow position:
               
chr29:2744556-2744068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 362
               

               
Conread position:
               
842-1320
               

               
Cow position:
               
chr29:32733046-32733503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
135, 107
               

               
Conread position:
               
842-1321
               

               
Cow position:
               
chr29:17109684-17110155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
842-1328
               

               
Cow position:
               
chr29:24623957-24624450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 219
               

               
Conread position:
               
842-1330
               

               
Cow position:
               
chr29:43080892-43080392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
842-1332
               

               
Cow position:
               
chr29:4480458-4479953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
842-1332
               

               
Cow position:
               
chr29:20626293-20626784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
119, 53
               

               
Conread position:
               
842-1334
               

               
Cow position:
               
chr29:27833703-27834205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 259
               

               
Conread position:
               
842-1335
               

               
Cow position:
               
chr29:9709415-9709911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
842-1336
               

               
Cow position:
               
chr29:35291815-35292302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 112
               

               
Conread position:
               
842-1337
               

               
Cow position:
               
chr29:10838666-10839160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 243
               

               
Conread position:
               
842-1337
               

               
Cow position:
               
chr29:16657407-16657908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
842-1341
               

               
Cow position:
               
chr29:4625277-4624778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 100
               

               
Conread position:
               
842-1342
               

               
Cow position:
               
chr29:23874172-23874684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 192
               

               
Conread position:
               
842-1343
               

               
Cow position:
               
chr29:15944285-15944792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
125, 241
               

               
Conread position:
               
842-1343
               

               
Cow position:
               
chr29:20674092-20673586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 264
               

               
Conread position:
               
842-1344
               

               
Cow position:
               
chr29:3584410-3583890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 269
               

               
Conread position:
               
842-1344
               

               
Cow position:
               
chr29:6635820-6636307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
135, 117
               

               
Conread position:
               
843-1084
               

               
Cow position:
               
chr29:2136382-2136144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
843-1100
               

               
Cow position:
               
chr29:5948070-5947810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
130, 160
               

               
Conread position:
               
844-971
               

               
Cow position:
               
chr29:25423542-25423669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
844-1063
               

               
Cow position:
               
chr29:1709636-1709864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
844-1109
               

               
Cow position:
               
chr29:7408171-7407895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
844-1159
               

               
Cow position:
               
chr29:17387-17067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
98, 208
               

               
Conread position:
               
844-1321
               

               
Cow position:
               
chr29:27816091-27816538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
239, 37
               

               
Conread position:
               
844-1325
               

               
Cow position:
               
chr29:732343-732817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
845-981
               

               
Cow position:
               
chr29:5977402-5977267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
845-981
               

               
Cow position:
               
chr29:14116761-14116897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
845-1037
               

               
Cow position:
               
chr29:32308605-32308404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
845-1080
               

               
Cow position:
               
chr29:42406382-42406636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
845-1085
               

               
Cow position:
               
chr29:1956372-1956126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
845-1096
               

               
Cow position:
               
chr29:45650623-45650361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
845-1101
               

               
Cow position:
               
chr29:44233230-44232967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
131, 243
               

               
Conread position:
               
845-1117
               

               
Cow position:
               
chr29:35281222-35281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
114, 51
               

               
Conread position:
               
845-1123
               

               
Cow position:
               
chr29:8190760-8190462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 141
               

               
Conread position:
               
845-1131
               

               
Cow position:
               
chr29:7041116-7040836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 83
               

               
Conread position:
               
845-1134
               

               
Cow position:
               
chr29:4328153-4328433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
845-1183
               

               
Cow position:
               
chr29:38349409-38349063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 85
               

               
Conread position:
               
845-1242
               

               
Cow position:
               
chr29:31926571-31926178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
845-1307
               

               
Cow position:
               
chr29:87298-86815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 51
               

               
Conread position:
               
845-1308
               

               
Cow position:
               
chr29:36633115-36632671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
845-1324
               

               
Cow position:
               
chr29:1307145-1306657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
89, 70
               

               
Conread position:
               
845-1329
               

               
Cow position:
               
chr29:29974762-29975248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 24
               

               
Conread position:
               
845-1342
               

               
Cow position:
               
chr29:1933839-1933347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 222
               

               
Conread position:
               
846-1317
               

               
Cow position:
               
chr29:10058807-10058345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 120
               

               
Conread position:
               
847-966
               

               
Cow position:
               
chr29:27825966-27826085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
847-973
               

               
Cow position:
               
chr29:43516957-43516834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
847-981
               

               
Cow position:
               
chr29:18338827-18338691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
847-989
               

               
Cow position:
               
chr29:28397852-28397709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
847-1083
               

               
Cow position:
               
chr29:21529020-21529251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 83
               

               
Conread position:
               
847-1107
               

               
Cow position:
               
chr29:734817-734553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 233
               

               
Conread position:
               
847-1107
               

               
Cow position:
               
chr29:10819764-10819490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
140, 204
               

               
Conread position:
               
847-1107
               

               
Cow position:
               
chr29:26160879-26160604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 260
               

               
Conread position:
               
847-1127
               

               
Cow position:
               
chr29:4524578-4524862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
128, 81
               

               
Conread position:
               
847-1137
               

               
Cow position:
               
chr29:18748863-18748584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
155, 49
               

               
Conread position:
               
847-1202
               

               
Cow position:
               
chr29:28637343-28636986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
847-1221
               

               
Cow position:
               
chr29:18963461-18963836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
137, 75
               

               
Conread position:
               
847-1222
               

               
Cow position:
               
chr29:6293746-6293377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
847-1223
               

               
Cow position:
               
chr29:20429251-20428860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
847-1291
               

               
Cow position:
               
chr29:5892568-5893021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
847-1294
               

               
Cow position:
               
chr29:465681-465223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 194
               

               
Conread position:
               
847-1303
               

               
Cow position:
               
chr29:39111587-39111140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 92
               

               
Conread position:
               
847-1315
               

               
Cow position:
               
chr29:40583518-40583986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 244
               

               
Conread position:
               
847-1317
               

               
Cow position:
               
chr29:28195798-28195335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 255
               

               
Conread position:
               
847-1319
               

               
Cow position:
               
chr29:19761993-19762463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 208
               

               
Conread position:
               
847-1320
               

               
Cow position:
               
chr29:14501315-14501796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
847-1320
               

               
Cow position:
               
chr29:26778609-26779079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 18
               

               
Conread position:
               
847-1333
               

               
Cow position:
               
chr29:35501927-35501449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
847-1340
               

               
Cow position:
               
chr29:29589196-29588705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 138
               

               
Conread position:
               
847-1340
               

               
Cow position:
               
chr29:35630695-35630191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 256
               

               
Conread position:
               
847-1344
               

               
Cow position:
               
chr29:4120570-4121080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 10
               

               
Conread position:
               
848-956
               

               
Cow position:
               
chr29:4002407-4002515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
848-981
               

               
Cow position:
               
chr29:22720850-22720981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
848-984
               

               
Cow position:
               
chr29:15576336-15576200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
848-1013
               

               
Cow position:
               
chr29:36356573-36356742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
848-1045
               

               
Cow position:
               
chr29:17135573-17135772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
848-1046
               

               
Cow position:
               
chr29:38760432-38760230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
848-1072
               

               
Cow position:
               
chr29:27007841-27008071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
848-1074
               

               
Cow position:
               
chr29:26335656-26335419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 164
               

               
Conread position:
               
848-1116
               

               
Cow position:
               
chr29:28273666-28273391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
129, 248
               

               
Conread position:
               
848-1129
               

               
Cow position:
               
chr29:24345742-24345437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 131
               

               
Conread position:
               
848-1130
               

               
Cow position:
               
chr29:21000361-21000651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
848-1145
               

               
Cow position:
               
chr29:11684734-11685033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
131, 149
               

               
Conread position:
               
848-1156
               

               
Cow position:
               
chr29:24728346-24728025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 257
               

               
Conread position:
               
848-1163
               

               
Cow position:
               
chr29:42848950-42849269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
848-1169
               

               
Cow position:
               
chr29:11136166-11135846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 42
               

               
Conread position:
               
848-1192
               

               
Cow position:
               
chr29:26130505-26130847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
164, 234
               

               
Conread position:
               
848-1197
               

               
Cow position:
               
chr29:37961250-37960898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
116, 22
               

               
Conread position:
               
848-1237
               

               
Cow position:
               
chr29:13372385-13372779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
127, 250
               

               
Conread position:
               
848-1242
               

               
Cow position:
               
chr29:36216841-36217233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 6
               

               
Conread position:
               
848-1299
               

               
Cow position:
               
chr29:42364292-42363839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 47
               

               
Conread position:
               
848-1316
               

               
Cow position:
               
chr29:43328359-43328829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 382
               

               
Conread position:
               
848-1317
               

               
Cow position:
               
chr29:19125082-19125528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
170, 51
               

               
Conread position:
               
848-1319
               

               
Cow position:
               
chr29:29056905-29057379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
848-1327
               

               
Cow position:
               
chr29:19756170-19756645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 182
               

               
Conread position:
               
848-1337
               

               
Cow position:
               
chr29:5062854-5063362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
848-1343
               

               
Cow position:
               
chr29:16609460-16609972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
849-1111
               

               
Cow position:
               
chr29:35636147-35636424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
849-1116
               

               
Cow position:
               
chr29:3395833-3396105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
851-985
               

               
Cow position:
               
chr29:2263302-2263167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
851-995
               

               
Cow position:
               
chr29:10296715-10296568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
851-1240
               

               
Cow position:
               
chr29:41811852-41811469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 44
               

               
Conread position:
               
852-981
               

               
Cow position:
               
chr29:7290622-7290748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
852-1169
               

               
Cow position:
               
chr29:17131882-17131569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
852-1225
               

               
Cow position:
               
chr29:12761692-12762061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
853-1249
               

               
Cow position:
               
chr29:1022005-1022423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 264
               

               
Conread position:
               
854-1018
               

               
Cow position:
               
chr29:21665698-21665869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
854-1267
               

               
Cow position:
               
chr29:7965981-7966393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
855-1318
               

               
Cow position:
               
chr29:26673174-26672700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
856-1019
               

               
Cow position:
               
chr29:5046544-5046378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
856-1224
               

               
Cow position:
               
chr29:13634570-13634193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
856-1319
               

               
Cow position:
               
chr29:19428398-19428850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
857-985
               

               
Cow position:
               
chr29:37785448-37785320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
857-1249
               

               
Cow position:
               
chr29:18085321-18085702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 136
               

               
Conread position:
               
858-1303
               

               
Cow position:
               
chr29:7956252-7955804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 156
               

               
Conread position:
               
859-1039
               

               
Cow position:
               
chr29:30367290-30367113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
127, 66
               

               
Conread position:
               
859-1081
               

               
Cow position:
               
chr29:4804966-4805196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
118, 186
               

               
Conread position:
               
859-1091
               

               
Cow position:
               
chr29:21534945-21534702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
125, 37
               

               
Conread position:
               
859-1097
               

               
Cow position:
               
chr29:9686268-9686021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
100, 95
               

               
Conread position:
               
859-1101
               

               
Cow position:
               
chr29:2885714-2885476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
859-1109
               

               
Cow position:
               
chr29:2522311-2522562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
859-1109
               

               
Cow position:
               
chr29:11634555-11634819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
859-1117
               

               
Cow position:
               
chr29:37292510-37292777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 94
               

               
Conread position:
               
859-1131
               

               
Cow position:
               
chr29:11696266-11696542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
859-1144
               

               
Cow position:
               
chr29:21682776-21682492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 37
               

               
Conread position:
               
859-1192
               

               
Cow position:
               
chr29:18694990-18695325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 168
               

               
Conread position:
               
859-1214
               

               
Cow position:
               
chr29:32521602-32521965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
859-1216
               

               
Cow position:
               
chr29:2984620-2984987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
859-1216
               

               
Cow position:
               
chr29:5099029-5098669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 203
               

               
Conread position:
               
859-1249
               

               
Cow position:
               
chr29:25088486-25088876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 172
               

               
Conread position:
               
859-1316
               

               
Cow position:
               
chr29:12784221-12783758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
859-1325
               

               
Cow position:
               
chr29:2644572-2644115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
859-1331
               

               
Cow position:
               
chr29:17463046-17462567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
859-1333
               

               
Cow position:
               
chr29:22069014-22068524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
113, 89
               

               
Conread position:
               
859-1334
               

               
Cow position:
               
chr29:27668909-27668439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
859-1337
               

               
Cow position:
               
chr29:2623747-2623260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 287
               

               
Conread position:
               
859-1338
               

               
Cow position:
               
chr29:16195585-16196073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
121, 109
               

               
Conread position:
               
859-1344
               

               
Cow position:
               
chr29:21933380-21932897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 211
               

               
Conread position:
               
860-1083
               

               
Cow position:
               
chr29:5919589-5919356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
860-1134
               

               
Cow position:
               
chr29:94811-94542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
104, 39
               

               
Conread position:
               
860-1140
               

               
Cow position:
               
chr29:20178391-20178113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
860-1236
               

               
Cow position:
               
chr29:13615909-13615540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
860-1237
               

               
Cow position:
               
chr29:356060-356438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 187
               

               
Conread position:
               
860-1248
               

               
Cow position:
               
chr29:25333719-25333334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
860-1249
               

               
Cow position:
               
chr29:19338713-19339129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 248
               

               
Conread position:
               
860-1249
               

               
Cow position:
               
chr29:22175427-22175808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
860-1249
               

               
Cow position:
               
chr29:40299277-40298890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
860-1336
               

               
Cow position:
               
chr29:12679890-12680376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
861-985
               

               
Cow position:
               
chr29:30227399-30227522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 74
               

               
Conread position:
               
861-989
               

               
Cow position:
               
chr29:26137521-26137649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 14
               

               
Conread position:
               
861-1083
               

               
Cow position:
               
chr29:29312781-29312554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
861-1200
               

               
Cow position:
               
chr29:40656428-40656779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
126, 215
               

               
Conread position:
               
861-1231
               

               
Cow position:
               
chr29:28868366-28868755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 208
               

               
Conread position:
               
861-1235
               

               
Cow position:
               
chr29:43495799-43496154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
862-1088
               

               
Cow position:
               
chr29:41076292-41076062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 179
               

               
Conread position:
               
862-1192
               

               
Cow position:
               
chr29:40165978-40166317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
862-1250
               

               
Cow position:
               
chr29:9911913-9912305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 99
               

               
Conread position:
               
862-1337
               

               
Cow position:
               
chr29:29769610-29769135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 92
               

               
Conread position:
               
863-1203
               

               
Cow position:
               
chr29:29302917-29302575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
124, 55
               

               
Conread position:
               
864-955
               

               
Cow position:
               
chr29:1886939-1886847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
864-1107
               

               
Cow position:
               
chr29:35742903-35742665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
172, 119
               

               
Conread position:
               
864-1236
               

               
Cow position:
               
chr29:37599466-37599105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
864-1272
               

               
Cow position:
               
chr29:109448-109833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 31
               

               
Conread position:
               
864-1293
               

               
Cow position:
               
chr29:2188599-2188181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
113, 104
               

               
Conread position:
               
865-1007
               

               
Cow position:
               
chr29:44009079-44008935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
865-1183
               

               
Cow position:
               
chr29:27009157-27009480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 176
               

               
Conread position:
               
865-1215
               

               
Cow position:
               
chr29:44236207-44236549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
182, 31
               

               
Conread position:
               
865-1333
               

               
Cow position:
               
chr29:22613174-22613636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
865-1340
               

               
Cow position:
               
chr29:3237620-3237127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 241
               

               
Conread position:
               
866-1325
               

               
Cow position:
               
chr29:42771402-42771859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
361, 33
               

               
Conread position:
               
869-1137
               

               
Cow position:
               
chr29:35738527-35738254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
117, 178
               

               
Conread position:
               
869-1321
               

               
Cow position:
               
chr29:17222151-17222618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 231
               

               
Conread position:
               
869-1334
               

               
Cow position:
               
chr29:32963297-32963739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
118, 218
               

               
Conread position:
               
870-957
               

               
Cow position:
               
chr29:38731369-38731455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
870-1088
               

               
Cow position:
               
chr29:21236860-21237088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
870-1113
               

               
Cow position:
               
chr29:34736721-34736470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 25
               

               
Conread position:
               
870-1125
               

               
Cow position:
               
chr29:24197887-24197635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
870-1128
               

               
Cow position:
               
chr29:16756799-16757064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
870-1186
               

               
Cow position:
               
chr29:9139152-9139488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
110, 303
               

               
Conread position:
               
870-1192
               

               
Cow position:
               
chr29:26318938-26319239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
870-1225
               

               
Cow position:
               
chr29:18021931-18021577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
107, 74
               

               
Conread position:
               
870-1253
               

               
Cow position:
               
chr29:4367465-4367859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
870-1253
               

               
Cow position:
               
chr29:26298726-26299105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
870-1294
               

               
Cow position:
               
chr29:19389230-19389655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
870-1322
               

               
Cow position:
               
chr29:8926715-8926242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
870-1337
               

               
Cow position:
               
chr29:31928723-31929205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
870-1338
               

               
Cow position:
               
chr29:28674942-28674485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 116
               

               
Conread position:
               
870-1343
               

               
Cow position:
               
chr29:34297821-34297347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
871-1178
               

               
Cow position:
               
chr29:18212237-18211939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
872-1085
               

               
Cow position:
               
chr29:30545116-30544899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
872-1153
               

               
Cow position:
               
chr29:31594369-31594093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 82
               

               
Conread position:
               
872-1192
               

               
Cow position:
               
chr29:13553878-13554209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 288
               

               
Conread position:
               
872-1318
               

               
Cow position:
               
chr29:40891956-40891508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
114, 236
               

               
Conread position:
               
873-1100
               

               
Cow position:
               
chr29:585029-585260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
874-1107
               

               
Cow position:
               
chr29:35797641-35797875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
113, 212
               

               
Conread position:
               
874-1263
               

               
Cow position:
               
chr29:1556680-1557073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 158
               

               
Conread position:
               
874-1330
               

               
Cow position:
               
chr29:13028205-13028663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
171, 78
               

               
Conread position:
               
874-1344
               

               
Cow position:
               
chr29:35459022-35458544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 7
               

               
Conread position:
               
875-1203
               

               
Cow position:
               
chr29:11562363-11562697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 208
               

               
Conread position:
               
875-1249
               

               
Cow position:
               
chr29:11787541-11787926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
876-1319
               

               
Cow position:
               
chr29:25737667-25737215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 362
               

               
Conread position:
               
876-1342
               

               
Cow position:
               
chr29:23578025-23577563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
136, 7
               

               
Conread position:
               
877-1217
               

               
Cow position:
               
chr29:23984213-23983857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
877-1240
               

               
Cow position:
               
chr29:20903537-20903171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 251
               

               
Conread position:
               
878-1084
               

               
Cow position:
               
chr29:4065841-4066053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
878-1169
               

               
Cow position:
               
chr29:19792528-19792226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
878-1175
               

               
Cow position:
               
chr29:18735891-18735583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
89, 159
               

               
Conread position:
               
878-1237
               

               
Cow position:
               
chr29:22895468-22895844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
878-1244
               

               
Cow position:
               
chr29:707193-706834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
879-1336
               

               
Cow position:
               
chr29:44378665-44378190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
879-1343
               

               
Cow position:
               
chr29:41530603-41531074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
880-1219
               

               
Cow position:
               
chr29:10235361-10235034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
882-1231
               

               
Cow position:
               
chr29:26615969-26615605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 89
               

               
Conread position:
               
883-1084
               

               
Cow position:
               
chr29:32767764-32767556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
883-1192
               

               
Cow position:
               
chr29:14615499-14615190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
883-1240
               

               
Cow position:
               
chr29:10653104-10653453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
97, 126
               

               
Conread position:
               
883-1343
               

               
Cow position:
               
chr29:11915573-11916047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 140
               

               
Conread position:
               
884-1227
               

               
Cow position:
               
chr29:16309508-16309849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
884-1317
               

               
Cow position:
               
chr29:25474665-25475131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
885-1164
               

               
Cow position:
               
chr29:24119978-24119695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 164
               

               
Conread position:
               
885-1344
               

               
Cow position:
               
chr29:27858550-27859011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 257
               

               
Conread position:
               
886-1154
               

               
Cow position:
               
chr29:26329974-26330241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
886-1197
               

               
Cow position:
               
chr29:17668255-17668565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 167
               

               
Conread position:
               
886-1248
               

               
Cow position:
               
chr29:26984986-26985355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
887-1248
               

               
Cow position:
               
chr29:39023577-39023210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 166
               

               
Conread position:
               
888-1308
               

               
Cow position:
               
chr29:21706613-21706208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 79
               

               
Conread position:
               
889-1315
               

               
Cow position:
               
chr29:22714965-22714514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 252
               

               
Conread position:
               
889-1336
               

               
Cow position:
               
chr29:4520098-4520546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 267
               

               
Conread position:
               
889-1340
               

               
Cow position:
               
chr29:24292638-24293091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
889-1341
               

               
Cow position:
               
chr29:25267880-25268359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
889-1341
               

               
Cow position:
               
chr29:30440687-30441160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
890-985
               

               
Cow position:
               
chr29:16735242-16735147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
890-1221
               

               
Cow position:
               
chr29:24578640-24578965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
890-1248
               

               
Cow position:
               
chr29:11704886-11705242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
890-1279
               

               
Cow position:
               
chr29:13639603-13639203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
890-1335
               

               
Cow position:
               
chr29:1395369-1395789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
890-1337
               

               
Cow position:
               
chr29:19949073-19949527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
890-1339
               

               
Cow position:
               
chr29:34773964-34773528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
891-1192
               

               
Cow position:
               
chr29:24103784-24103468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 185
               

               
Conread position:
               
891-1247
               

               
Cow position:
               
chr29:6286393-6286035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 200
               

               
Conread position:
               
891-1317
               

               
Cow position:
               
chr29:23697743-23698168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
82, 197
               

               
Conread position:
               
892-1129
               

               
Cow position:
               
chr29:42886146-42886399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 244
               

               
Conread position:
               
892-1302
               

               
Cow position:
               
chr29:34744851-34744448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
68, 159
               

               
Conread position:
               
892-1338
               

               
Cow position:
               
chr29:23844597-23845057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 147
               

               
Conread position:
               
893-1299
               

               
Cow position:
               
chr29:19254056-19253649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 193
               

               
Conread position:
               
894-1313
               

               
Cow position:
               
chr29:9310390-9310797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 173
               

               
Conread position:
               
896-1126
               

               
Cow position:
               
chr29:39642946-39643183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
896-1203
               

               
Cow position:
               
chr29:868542-868859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
87, 196
               

               
Conread position:
               
897-1226
               

               
Cow position:
               
chr29:1229379-1229714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
898-1221
               

               
Cow position:
               
chr29:19821068-19821385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
901-1320
               

               
Cow position:
               
chr29:38580752-38581193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
904-1329
               

               
Cow position:
               
chr29:23155028-23155444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 92
               

               
Conread position:
               
906-1235
               

               
Cow position:
               
chr29:463874-463536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
906-1271
               

               
Cow position:
               
chr29:28166438-28166072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 197
               

               
Conread position:
               
906-1292
               

               
Cow position:
               
chr29:5109431-5109007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 334
               

               
Conread position:
               
906-1319
               

               
Cow position:
               
chr29:39280011-39280422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 41
               

               
Conread position:
               
906-1336
               

               
Cow position:
               
chr29:28739408-28739848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
909-1227
               

               
Cow position:
               
chr29:28446477-28446148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
77, 230
               

               
Conread position:
               
909-1343
               

               
Cow position:
               
chr29:35677762-35677317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 305
               

               
Conread position:
               
910-1342
               

               
Cow position:
               
chr29:31489103-31489547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
911-1159
               

               
Cow position:
               
chr29:14484761-14484497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
912-1092
               

               
Cow position:
               
chr29:29262832-29263005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
913-1201
               

               
Cow position:
               
chr29:44682304-44682022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
914-1333
               

               
Cow position:
               
chr29:6337450-6337865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 185
               

               
Conread position:
               
915-1249
               

               
Cow position:
               
chr29:26654252-26653915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 148
               

               
Conread position:
               
916-1294
               

               
Cow position:
               
chr29:27618667-27619056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
42, 118
               

               
Conread position:
               
920-1342
               

               
Cow position:
               
chr29:26269862-26270289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
921-1317
               

               
Cow position:
               
chr29:36209959-36210348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
59, 87
               

               
Conread position:
               
923-1224
               

               
Cow position:
               
chr29:17154572-17154883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
924-1225
               

               
Cow position:
               
chr29:43009287-43008978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
55, 179
               

               
Conread position:
               
927-1281
               

               
Cow position:
               
chr29:9718972-9718613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
927-1320
               

               
Cow position:
               
chr29:25091910-25092305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
928-1331
               

               
Cow position:
               
chr29:26275415-26275815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
932-1235
               

               
Cow position:
               
chr29:11054048-11053745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
934-1203
               

               
Cow position:
               
chr29:30188533-30188268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 196
               

               
Conread position:
               
935-1245
               

               
Cow position:
               
chr29:32211251-32210947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 150
               

               
Conread position:
               
936-1188
               

               
Cow position:
               
chr29:44988972-44988721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
936-1237
               

               
Cow position:
               
chr29:5186689-5186375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
937-1297
               

               
Cow position:
               
chr29:11646914-11647267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
938-1238
               

               
Cow position:
               
chr29:4334539-4334836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 146
               

               
Conread position:
               
942-1328
               

               
Cow position:
               
chr29:41113045-41112680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
947-1319
               

               
Cow position:
               
chr29:43099925-43099548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
950-1249
               

               
Cow position:
               
chr29:40960016-40959720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
962-1285
               

               
Cow position:
               
chr29:34359138-34358811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 269
               

               
Conread position:
               
962-1303
               

               
Cow position:
               
chr29:24045831-24046182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
971-1249
               

               
Cow position:
               
chr29:26559390-26559116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
972-1318
               

               
Cow position:
               
chr29:30227420-30227081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
976-1319
               

               
Cow position:
               
chr29:31943736-31944066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
979-1248
               

               
Cow position:
               
chr29:24252097-24252362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
979-1251
               

               
Cow position:
               
chr29:23244021-23243742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 134
               

               
Conread position:
               
979-1263
               

               
Cow position:
               
chr29:29314796-29314504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
7, 233
               

               
Conread position:
               
979-1326
               

               
Cow position:
               
chr29:31674489-31674837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 255
               

               
Conread position:
               
981-1238
               

               
Cow position:
               
chr29:4002757-4003009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
5, 49
               

               
Conread position:
               
982-1336
               

               
Cow position:
               
chr29:29942870-29942508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 295
               

               
Conread position:
               
982-1337
               

               
Cow position:
               
chr29:10018437-10018784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
982-1344
               

               
Cow position:
               
chr29:25814972-25814610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
985-1221
               

               
Cow position:
               
chr29:27329758-27329994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
985-1222
               

               
Cow position:
               
chr29:26416226-26416454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
985-1248
               

               
Cow position:
               
chr29:27588789-27589050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
94, 134
               

               
Conread position:
               
985-1294
               

               
Cow position:
               
chr29:5275389-5275076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
985-1318
               

               
Cow position:
               
chr29:35084357-35084024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
985-1319
               

               
Cow position:
               
chr29:17296997-17297338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
22, 225
               

               
Conread position:
               
985-1326
               

               
Cow position:
               
chr29:37618172-37618514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
986-1295
               

               
Cow position:
               
chr29:26259343-26259652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
990-1236
               

               
Cow position:
               
chr29:29176744-29176502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
991-1330
               

               
Cow position:
               
chr29:12025599-12025265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
993-1185
               

               
Cow position:
               
chr29:27846344-27846530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
996-1331
               

               
Cow position:
               
chr29:3825851-3826177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
1001-1336
               

               
Cow position:
               
chr29:5046535-5046871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
1005-1289
               

               
Cow position:
               
chr29:29795499-29795210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1005-1338
               

               
Cow position:
               
chr29:22647736-22648064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
1005-1344
               

               
Cow position:
               
chr29:29189204-29188871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
1010-1245
               

               
Cow position:
               
chr29:847750-847518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
1010-1247
               

               
Cow position:
               
chr29:21941490-21941731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1010-1344
               

               
Cow position:
               
chr29:1007707-1008045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
1011-1343
               

               
Cow position:
               
chr29:5831144-5830794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 211
               

               
Conread position:
               
1012-1251
               

               
Cow position:
               
chr29:12626086-12625845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 237
               

               
Conread position:
               
1012-1324
               

               
Cow position:
               
chr29:27835214-27835521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 64
               

               
Conread position:
               
1025-1251
               

               
Cow position:
               
chr29:2263091-2262861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
1025-1330
               

               
Cow position:
               
chr29:20770249-20770556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
1026-1326
               

               
Cow position:
               
chr29:21665994-21666293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
1030-1317
               

               
Cow position:
               
chr29:7624087-7624363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
1031-1319
               

               
Cow position:
               
chr29:18450221-18449938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
1031-1319
               

               
Cow position:
               
chr29:29923663-29923376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
1033-1339
               

               
Cow position:
               
chr29:20924819-20925128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
1034-1331
               

               
Cow position:
               
chr29:38348114-38347815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
1035-1230
               

               
Cow position:
               
chr29:742724-742538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
1039-1221
               

               
Cow position:
               
chr29:18012474-18012660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
1039-1315
               

               
Cow position:
               
chr29:4418747-4419023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
175, 46
               

               
Conread position:
               
1040-1318
               

               
Cow position:
               
chr29:28814056-28813773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
1041-1327
               

               
Cow position:
               
chr29:23220578-23220279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
1043-1303
               

               
Cow position:
               
chr29:29324488-29324236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
190, 32
               

               
Conread position:
               
1044-1299
               

               
Cow position:
               
chr29:23825292-23825032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
1044-1317
               

               
Cow position:
               
chr29:22029031-22028763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 116
               

               
Conread position:
               
1044-1337
               

               
Cow position:
               
chr29:28840080-28840396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1045-1321
               

               
Cow position:
               
chr29:36952372-36952110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 121
               

               
Conread position:
               
1045-1335
               

               
Cow position:
               
chr29:23825596-23825879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 195
               

               
Conread position:
               
1045-1335
               

               
Cow position:
               
chr29:32656359-32656650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 49
               

               
Conread position:
               
1048-1320
               

               
Cow position:
               
chr29:15947096-15947370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
1052-1248
               

               
Cow position:
               
chr29:38978464-38978658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
1052-1284
               

               
Cow position:
               
chr29:32176614-32176833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1052-1291
               

               
Cow position:
               
chr29:30548708-30548948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 177
               

               
Conread position:
               
1052-1317
               

               
Cow position:
               
chr29:38980136-38979882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
1052-1323
               

               
Cow position:
               
chr29:44139311-44139041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
1054-1330
               

               
Cow position:
               
chr29:38396300-38396574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 32
               

               
Conread position:
               
1060-1303
               

               
Cow position:
               
chr29:43544659-43544421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1060-1312
               

               
Cow position:
               
chr29:30681769-30681510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
1060-1341
               

               
Cow position:
               
chr29:42630064-42630340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
1061-1331
               

               
Cow position:
               
chr29:22167138-22166874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
16, 157
               

               
Conread position:
               
1066-1327
               

               
Cow position:
               
chr29:16290673-16290931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
1072-1336
               

               
Cow position:
               
chr29:44991471-44991209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
1075-1246
               

               
Cow position:
               
chr29:683531-683367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
1075-1332
               

               
Cow position:
               
chr29:4070583-4070834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
1082-1319
               

               
Cow position:
               
chr29:22735142-22734906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
171, 73
               

               
Conread position:
               
1082-1327
               

               
Cow position:
               
chr29:31651372-31651610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
1083-1319
               

               
Cow position:
               
chr29:30827372-30827608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
149, 10
               

               
Conread position:
               
1084-1329
               

               
Cow position:
               
chr29:40791275-40791508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
232, 62
               

               
Conread position:
               
1084-1335
               

               
Cow position:
               
chr29:31981797-31982037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1085-1336
               

               
Cow position:
               
chr29:28066459-28066697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1086-1299
               

               
Cow position:
               
chr29:4423472-4423270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
1086-1303
               

               
Cow position:
               
chr29:32197664-32197878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1087-1335
               

               
Cow position:
               
chr29:396381-396618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1093-1303
               

               
Cow position:
               
chr29:17804509-17804714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1093-1317
               

               
Cow position:
               
chr29:36357103-36357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
1093-1319
               

               
Cow position:
               
chr29:26540566-26540340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
132, 125
               

               
Conread position:
               
1094-1291
               

               
Cow position:
               
chr29:22723576-22723771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
1101-1317
               

               
Cow position:
               
chr29:9378619-9378833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1101-1330
               

               
Cow position:
               
chr29:38754957-38754728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
1102-1338
               

               
Cow position:
               
chr29:39038286-39038051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
212, 222
               

               
Conread position:
               
1103-1335
               

               
Cow position:
               
chr29:16200494-16200261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
1105-1335
               

               
Cow position:
               
chr29:29308586-29308369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
1105-1343
               

               
Cow position:
               
chr29:7290762-7290994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
200, 123
               

               
Conread position:
               
1106-1320
               

               
Cow position:
               
chr29:36781317-36781109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1108-1321
               

               
Cow position:
               
chr29:19363700-19363911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
206, 52
               

               
Conread position:
               
1109-1322
               

               
Cow position:
               
chr29:32656102-32655890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
1109-1338
               

               
Cow position:
               
chr29:22729558-22729786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
205, 39
               

               
Conread position:
               
1114-1287
               

               
Cow position:
               
chr29:15796481-15796655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
112, 41
               

               
Conread position:
               
1114-1325
               

               
Cow position:
               
chr29:15797947-15798157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
112, 177
               

               
Conread position:
               
1114-1338
               

               
Cow position:
               
chr29:936205-936420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1115-1331
               

               
Cow position:
               
chr29:12890681-12890887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1116-1319
               

               
Cow position:
               
chr29:43088308-43088506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1119-1344
               

               
Cow position:
               
chr29:40351075-40350855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
190, 33
               

               
Conread position:
               
1120-1327
               

               
Cow position:
               
chr29:27811968-27812172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
1122-1332
               

               
Cow position:
               
chr29:14576862-14577072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
193, 106
               

               
Conread position:
               
1123-1340
               

               
Cow position:
               
chr29:25288919-25288700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
128, 56
               

               
Conread position:
               
1130-1313
               

               
Cow position:
               
chr29:7444050-7443873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1133-1330
               

               
Cow position:
               
chr29:32215723-32215916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
186, 15
               

               
Conread position:
               
1136-1320
               

               
Cow position:
               
chr29:22577162-22576977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
1140-1319
               

               
Cow position:
               
chr29:17282089-17282261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1148-1288
               

               
Cow position:
               
chr29:34688877-34688741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1149-1338
               

               
Cow position:
               
chr29:38732183-38732375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1152-1324
               

               
Cow position:
               
chr29:33143321-33143151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1157-1326
               

               
Cow position:
               
chr29:24660723-24660884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1157-1331
               

               
Cow position:
               
chr29:7414539-7414706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
1157-1343
               

               
Cow position:
               
chr29:41223203-41223389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
160, 41
               

               
Conread position:
               
1158-1335
               

               
Cow position:
               
chr29:25981963-25981788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
1162-1341
               

               
Cow position:
               
chr29:40112425-40112602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
1166-1336
               

               
Cow position:
               
chr29:36546735-36546567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
1183-1317
               

               
Cow position:
               
chr29:38010509-38010643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
1200-1341
               

               
Cow position:
               
chr29:659363-659503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               
Show alignments to all cow chromosomes.