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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8045H10.3
        

               
Conread position:
               
1-147
               

               
Cow position:
               
chr1:24528819-24528671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr1:30504250-30504409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:89729177-89729011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:21131305-21131130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:75967216-75967396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:732145-731971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:52506764-52506584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:71797120-71796941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
53, 91
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:84116181-84116371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:23634121-23633930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:32631246-32631442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 160
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:37646220-37646025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 184
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:100770959-100770768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:87216242-87216444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 177
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:49839287-49839496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:41004587-41004353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr1:33811714-33811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 202
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr1:64962875-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr1:71946591-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:38544667-38544444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr1:24655740-24655979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:11873577-11873337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:11770514-11770263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 201
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:99095143-99095393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 219
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:57264207-57263959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 194
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr1:76222911-76222651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 132
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr1:73561870-73561609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:47008810-47009072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 183
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr1:3035213-3034957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
57, 185
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:60032818-60032556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:61724245-61723976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 192
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:62919956-62920217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:57635246-57635517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
60, 198
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:52956039-52956317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 204
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:11914098-11913809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 158
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:52753386-52753088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 160
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:79278662-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:20204806-20205106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 184
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:42874167-42873871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 137
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:57297271-57297561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr1:31414179-31413891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
60, 168
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr1:73761572-73761272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:3456652-3456936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:4032414-4032718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:21460647-21460958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 237
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:64251272-64250966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 258
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:5023959-5023676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
170, 56
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:69264601-69264894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
58, 139
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:34771724-34771416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
58, 203
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:51531553-51531838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:53424967-53425264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
74, 52
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:55146581-55146885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:72286270-72285981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:90868656-90868354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:95215406-95215103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
48, 192
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:100705912-100706213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
60, 204
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:96478475-96478790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 206
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr1:85596724-85597036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 240
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr1:81563513-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:44125860-44125533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
62, 310
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:45289093-45288765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:36931939-36932265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 196
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:80899887-80900235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
49, 197
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:68253371-68253714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 173
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:89349757-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 54
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr1:37887007-37886692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr1:39069171-39068836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr1:71253775-71253436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
60, 191
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:80422082-80422397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:8349531-8349200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 205
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:36874795-36875153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:52994803-52995153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr1:74822231-74822583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr1:84240679-84241013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
62, 211
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr1:84255534-84255900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 321
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr1:89342213-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 318
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:52039416-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 305
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr1:24534463-24534094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr1:13637891-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 195
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:43358235-43357825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 186
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:53397767-53398154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 151
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:91816994-91816587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr1:101792318-101791933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr1:98030694-98031105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr1:43389268-43388863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 209
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr1:55705474-55705055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 211
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr1:89381058-89381466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 178
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr1:6941245-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr1:6958658-6959072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr1:62964059-62964461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr1:78809663-78810073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
60, 184
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr1:19145139-19144741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr1:100761871-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr1:6760238-6759848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr1:100421623-100422020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:12871227-12870809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 383
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:16767305-16766885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 118
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:35162183-35162606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 208
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:41181624-41182037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 186
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:56225255-56225667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 302
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:64678477-64678881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 156
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:70380366-70379965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
55, 189
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:85028740-85029137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr1:71045534-71045938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 203
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr1:102349978-102349557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
52, 270
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:7971210-7971610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:42887483-42887074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 142
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:53374215-53374633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:55229764-55230179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
52, 145
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:64804328-64803891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:66898698-66898288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:72012024-72011616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 180
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:22728827-22729261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 317
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:26896045-26895605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
52, 124
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:31348130-31347727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 163
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:34159611-34160035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 217
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:41056464-41056886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:43352871-43352446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:44506748-44507175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:56477374-56477792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 113
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:63390994-63390557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:68217579-68217159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:69539478-69539892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:100324946-100324547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 56
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:6166032-6166440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
99, 128
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:43505303-43505732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 212
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:46218363-46218758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:48105654-48105217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 235
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:74084412-74083980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:79165311-79164874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 212
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:84812157-84811733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 122
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:100400422-100399994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 211
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:22730541-22730942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:45020024-45019600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:53622744-53623165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:61005786-61005348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
56, 186
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:101822718-101822295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
60, 202
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:8402-8828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:3429729-3429304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:3924014-3923594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:20002456-20002024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 183
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:21954438-21954017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 121
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:39418339-39417921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 316
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:40599828-40600235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 169
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:48444403-48443980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:53520686-53521115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 205
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:54199603-54199187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:71119291-71119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
46, 141
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:82880445-82880841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
149, 18
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:86113633-86113186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 233
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:87072484-87072904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:90864520-90864081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
42, 207
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:100551750-100552176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
58, 206
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:3323638-3324085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
44, 175
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:10778353-10778765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 195
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:51445659-51446093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 199
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:54478104-54478527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 302
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:68827126-68826713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
60, 205
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:73960481-73960895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 190
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:92963178-92963587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
58, 119
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:99609145-99609578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 226
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:99642590-99642158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 208
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr1:75744640-75745073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 185
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:41696834-41697266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 191
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:50931189-50930765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr1:1981330-1980895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr1:45555140-45555583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr1:55357506-55357072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 194
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr1:94226768-94226327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr1:45673492-45673691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:57900960-57900730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr1:22448806-22448543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr1:44155043-44155308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:68912532-68912799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 179
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr1:94212014-94212313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 189
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr1:38401589-38401912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
143, 19
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr1:5135911-5135585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr1:3137714-3138040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr1:3790275-3789943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr1:98551494-98551844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr1:40531328-40530970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr1:22826950-22827317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr1:76019901-76019526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr1:61735658-61735267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 168
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr1:54258348-54258774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 290
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr1:89510152-89509722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 134
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr1:39427201-39426809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr1:64302453-64302042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr1:91066368-91065947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 194
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr1:97611872-97611463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
52, 126
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr1:15547249-15547676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 205
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr1:10942311-10941884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
59, 146
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr1:10964075-10964502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 146
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr1:78857542-78857111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 143
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr1:12596119-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr1:77099756-77099527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
58, 70
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr1:666142-666390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 196
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr1:76470441-76470681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 211
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr1:99136649-99136387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 181
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr1:57396145-57395875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr1:102647487-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr1:4374557-4374261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr1:88652412-88652720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
51, 172
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr1:93810223-93810515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 70
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chr1:21835730-21836017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 180
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr1:26702426-26702120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 254
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr1:68951413-68951712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
58, 212
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr1:81913370-81913035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
58, 128
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr1:84239325-84238998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 246
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr1:79844250-79844591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
58, 114
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr1:81613167-81613521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 178
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr1:4290940-4291319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 312
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr1:48580913-48581300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
58, 205
               

               
Conread position:
               
3-375
               

               
Cow position:
               
chr1:31348659-31348261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 347
               

               
Conread position:
               
3-375
               

               
Cow position:
               
chr1:72304589-72304223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr1:11728959-11729365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
54, 203
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr1:34856847-34856432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr1:102266485-102266076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr1:61742185-61741763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr1:47658135-47658554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 119
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr1:52913087-52912686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr1:68818016-68817595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr1:81290300-81290710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr1:25383444-25383876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 206
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr1:31934295-31934711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 184
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr1:96964102-96964526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr1:4414426-4414021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 206
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr1:14379748-14379342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:49433483-49433052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:57575986-57575555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 180
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:82936800-82936396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:97954667-97954274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:52329747-52329311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 269
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:68845704-68845296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
46, 144
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:78091818-78092250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 186
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:81228558-81228126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 310
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:92197242-92197664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
3-412
               

               
Cow position:
               
chr1:24133274-24132852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 137
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr1:3962902-3962462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr1:10632835-10633255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
54, 167
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr1:19482291-19481886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
3-420
               

               
Cow position:
               
chr1:51394201-51394637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr1:51968252-51968505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr1:94403999-94404283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
57, 196
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr1:20384838-20384539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 146
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr1:37309728-37309432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
53, 160
               

               
Conread position:
               
4-314
               

               
Cow position:
               
chr1:3720644-3720337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr1:100800138-100800464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
51, 160
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr1:85162765-85162424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr1:77462147-77462545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
4-408
               

               
Cow position:
               
chr1:36997975-36998389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
53, 195
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr1:67821426-67821101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 90
               

               
Conread position:
               
5-411
               

               
Cow position:
               
chr1:7739753-7740153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 78
               

               
Conread position:
               
8-293
               

               
Cow position:
               
chr1:89485371-89485667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chr1:47233688-47233351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 176
               

               
Conread position:
               
8-368
               

               
Cow position:
               
chr1:53458493-53458865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 191
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chr1:71079170-71078770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
8-409
               

               
Cow position:
               
chr1:1956541-1956130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 138
               

               
Conread position:
               
8-409
               

               
Cow position:
               
chr1:74956237-74955824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
51, 260
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr1:68854961-68855375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
8-411
               

               
Cow position:
               
chr1:52496568-52496978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 173
               

               
Conread position:
               
8-411
               

               
Cow position:
               
chr1:72069040-72068624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr1:55135621-55135912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
9-394
               

               
Cow position:
               
chr1:77720444-77720067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
52, 190
               

               
Conread position:
               
9-394
               

               
Cow position:
               
chr1:100741080-100741475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
9-411
               

               
Cow position:
               
chr1:19465850-19466246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
9-411
               

               
Cow position:
               
chr1:34685982-34686376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
10-407
               

               
Cow position:
               
chr1:95100750-95101157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 127
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr1:5423946-5423522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 206
               

               
Conread position:
               
11-312
               

               
Cow position:
               
chr1:62291896-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 172
               

               
Conread position:
               
12-265
               

               
Cow position:
               
chr1:97755312-97755579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
12-276
               

               
Cow position:
               
chr1:82884599-82884322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 176
               

               
Conread position:
               
12-291
               

               
Cow position:
               
chr1:92433809-92434086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr1:95056846-95057221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr1:102784751-102785151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
12-408
               

               
Cow position:
               
chr1:29935591-29935184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
12-412
               

               
Cow position:
               
chr1:54207028-54206608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 300
               

               
Conread position:
               
12-420
               

               
Cow position:
               
chr1:70828703-70829115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
13-235
               

               
Cow position:
               
chr1:1403680-1403455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chr1:101207625-101207820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
14-410
               

               
Cow position:
               
chr1:86110928-86110536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
16-411
               

               
Cow position:
               
chr1:96305174-96304764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
24-347
               

               
Cow position:
               
chr1:90976280-90975948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
25-227
               

               
Cow position:
               
chr1:20544111-20544316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
25-409
               

               
Cow position:
               
chr1:40192874-40192495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
29-405
               

               
Cow position:
               
chr1:58754977-58754594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr1:63530393-63530768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 137
               

               
Conread position:
               
39-285
               

               
Cow position:
               
chr1:102291327-102291068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
44-412
               

               
Cow position:
               
chr1:91023635-91023257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 190
               

               
Conread position:
               
45-410
               

               
Cow position:
               
chr1:96472279-96472625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 135
               

               
Conread position:
               
49-392
               

               
Cow position:
               
chr1:95499655-95499305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
49-408
               

               
Cow position:
               
chr1:52435107-52435482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 148
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr1:101866660-101866289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
51-252
               

               
Cow position:
               
chr1:82443618-82443411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
51-292
               

               
Cow position:
               
chr1:71135991-71136238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
51-292
               

               
Cow position:
               
chr1:94261386-94261622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
51-326
               

               
Cow position:
               
chr1:75933111-75933385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 172
               

               
Conread position:
               
51-382
               

               
Cow position:
               
chr1:72103685-72104035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
51-402
               

               
Cow position:
               
chr1:12464825-12464464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
51-406
               

               
Cow position:
               
chr1:4401984-4402353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
50, 205
               

               
Conread position:
               
51-408
               

               
Cow position:
               
chr1:49317658-49317295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
9, 160
               

               
Conread position:
               
51-409
               

               
Cow position:
               
chr1:68763843-68763476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chr1:20667903-20667540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chr1:51417615-51417975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chr1:59518759-59519121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 203
               

               
Conread position:
               
51-412
               

               
Cow position:
               
chr1:65318416-65318788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
52-293
               

               
Cow position:
               
chr1:43703249-43703496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
97, 131
               

               
Conread position:
               
52-293
               

               
Cow position:
               
chr1:81868885-81868642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
52-395
               

               
Cow position:
               
chr1:76613290-76612938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr1:22525721-22526084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
53-291
               

               
Cow position:
               
chr1:98310908-98311157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
56-402
               

               
Cow position:
               
chr1:24542737-24542369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 164
               

               
Conread position:
               
57-252
               

               
Cow position:
               
chr1:99039506-99039312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 121
               

               
Conread position:
               
57-321
               

               
Cow position:
               
chr1:12978527-12978796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 118
               

               
Conread position:
               
57-334
               

               
Cow position:
               
chr1:48730978-48730706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
57-418
               

               
Cow position:
               
chr1:33331238-33330884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
58-228
               

               
Cow position:
               
chr1:100812722-100812556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
59-188
               

               
Cow position:
               
chr1:89082959-89083094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
59-268
               

               
Cow position:
               
chr1:24445778-24445566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
59-277
               

               
Cow position:
               
chr1:89508405-89508620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
59-390
               

               
Cow position:
               
chr1:93528543-93528883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
48, 154
               

               
Conread position:
               
59-402
               

               
Cow position:
               
chr1:38753766-38754118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
59-402
               

               
Cow position:
               
chr1:61564645-61564982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
90, 159
               

               
Conread position:
               
59-404
               

               
Cow position:
               
chr1:31272592-31272252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
59-408
               

               
Cow position:
               
chr1:63596208-63595844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
5, 38
               

               
Conread position:
               
59-410
               

               
Cow position:
               
chr1:88913166-88913529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 149
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr1:19970752-19970384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr1:92580610-92580969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
59-412
               

               
Cow position:
               
chr1:54156890-54156523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 135
               

               
Conread position:
               
60-193
               

               
Cow position:
               
chr1:31960074-31960214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
60-194
               

               
Cow position:
               
chr1:102113255-102113117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-201
               

               
Cow position:
               
chr1:83593955-83593812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
60-234
               

               
Cow position:
               
chr1:99614301-99614474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 88
               

               
Conread position:
               
60-238
               

               
Cow position:
               
chr1:51684653-51684836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
60-251
               

               
Cow position:
               
chr1:95654862-95654671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
60-252
               

               
Cow position:
               
chr1:45535555-45535750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
60-253
               

               
Cow position:
               
chr1:70028432-70028624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
60-274
               

               
Cow position:
               
chr1:1991571-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 68
               

               
Conread position:
               
60-277
               

               
Cow position:
               
chr1:101551311-101551534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
60-285
               

               
Cow position:
               
chr1:91800752-91800521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-287
               

               
Cow position:
               
chr1:89497815-89498034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
121, 60
               

               
Conread position:
               
60-291
               

               
Cow position:
               
chr1:7350392-7350634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-292
               

               
Cow position:
               
chr1:6788436-6788197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
60-292
               

               
Cow position:
               
chr1:69004246-69004479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
60-292
               

               
Cow position:
               
chr1:74947273-74947032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 135
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr1:3167219-3166989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr1:70026494-70026258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
60-312
               

               
Cow position:
               
chr1:27380324-27380561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
60-322
               

               
Cow position:
               
chr1:62036654-62036919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
60-327
               

               
Cow position:
               
chr1:39510200-39509938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
60-327
               

               
Cow position:
               
chr1:96136337-96136586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
60-331
               

               
Cow position:
               
chr1:100393311-100393039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
174, 75
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr1:3882615-3882332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 244
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr1:65909376-65909639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr1:92369582-92369861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
89, 242
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr1:97696590-97696871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 235
               

               
Conread position:
               
60-341
               

               
Cow position:
               
chr1:93043879-93044150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
60-372
               

               
Cow position:
               
chr1:31608044-31607715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
60-375
               

               
Cow position:
               
chr1:96277205-96276879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
78, 136
               

               
Conread position:
               
60-393
               

               
Cow position:
               
chr1:80311320-80311649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
157, 113
               

               
Conread position:
               
60-394
               

               
Cow position:
               
chr1:24581433-24581759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
60-394
               

               
Cow position:
               
chr1:101713971-101714309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
60-395
               

               
Cow position:
               
chr1:97820539-97820878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
86, 146
               

               
Conread position:
               
60-397
               

               
Cow position:
               
chr1:71227930-71228291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 247
               

               
Conread position:
               
60-401
               

               
Cow position:
               
chr1:33207021-33206674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
189, 92
               

               
Conread position:
               
60-401
               

               
Cow position:
               
chr1:63434956-63434598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr1:42256654-42256304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 150
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr1:69678472-69678122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
177, 67
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr1:75382845-75383164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr1:81569181-81568828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr1:90621661-90621305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr1:4691444-4691794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr1:12222755-12222398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr1:20000901-20000550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 241
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr1:42545934-42545594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr1:73546053-73545702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr1:10655331-10655684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
45, 137
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr1:22192613-22192977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 248
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr1:23186947-23186595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr1:33719967-33720311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
40, 130
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr1:71295461-71295096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr1:95176789-95177126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 204
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr1:100450335-100449984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
18, 147
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr1:101632489-101632143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:5597348-5597003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
189, 58
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:41115865-41115527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
91, 128
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:61884769-61885121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 75
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:62519207-62519575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:86682713-86682359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:93499476-93499828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr1:95557886-95558248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:627815-628178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:6077748-6078112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
86, 114
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:6305015-6304667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:7748067-7748426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:7752233-7752590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:11772227-11771873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:15333731-15334098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:18936980-18936627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:21787180-21787534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 241
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:25734708-25735078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:28563719-28563351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:42398347-42397986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
45, 278
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:55429106-55428743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:70434853-70435196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 90
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:70538457-70538820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 242
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:78096786-78097136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 59
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr1:83659424-83659065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr1:484616-484252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr1:37322152-37321799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 199
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr1:78810889-78811249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 121
               

               
Conread position:
               
60-413
               

               
Cow position:
               
chr1:68619084-68618728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
60-417
               

               
Cow position:
               
chr1:61391939-61391580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
89, 186
               

               
Conread position:
               
60-417
               

               
Cow position:
               
chr1:72035076-72034712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
60-418
               

               
Cow position:
               
chr1:16855841-16855484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
188, 79
               

               
Conread position:
               
60-419
               

               
Cow position:
               
chr1:69695153-69694791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
47, 140
               

               
Conread position:
               
60-419
               

               
Cow position:
               
chr1:83072293-83072658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
60-419
               

               
Cow position:
               
chr1:87095381-87094992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
61-266
               

               
Cow position:
               
chr1:24413294-24413509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
61-290
               

               
Cow position:
               
chr1:83583083-83582849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
61-292
               

               
Cow position:
               
chr1:23512804-23512573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
117, 143
               

               
Conread position:
               
61-325
               

               
Cow position:
               
chr1:60281221-60281491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 105
               

               
Conread position:
               
61-368
               

               
Cow position:
               
chr1:91811638-91811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
251, 74
               

               
Conread position:
               
61-401
               

               
Cow position:
               
chr1:724589-724939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
61-404
               

               
Cow position:
               
chr1:43872480-43872106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
93, 218
               

               
Conread position:
               
61-408
               

               
Cow position:
               
chr1:197153-196799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 236
               

               
Conread position:
               
61-410
               

               
Cow position:
               
chr1:24778134-24777775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
61-411
               

               
Cow position:
               
chr1:30047740-30047417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
61-411
               

               
Cow position:
               
chr1:53369929-53370294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
61-412
               

               
Cow position:
               
chr1:74929863-74929497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
62-293
               

               
Cow position:
               
chr1:77683209-77683439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 121
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chr1:85647930-85647653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 131
               

               
Conread position:
               
62-395
               

               
Cow position:
               
chr1:101634556-101634893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
85, 244
               

               
Conread position:
               
62-402
               

               
Cow position:
               
chr1:42175576-42175929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 115
               

               
Conread position:
               
62-404
               

               
Cow position:
               
chr1:82337929-82337577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 193
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr1:31765541-31765160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr1:57880937-57880573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
63-411
               

               
Cow position:
               
chr1:87197680-87198033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 64
               

               
Conread position:
               
64-334
               

               
Cow position:
               
chr1:53671884-53671623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
65-340
               

               
Cow position:
               
chr1:91875053-91874783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
65-409
               

               
Cow position:
               
chr1:20950576-20950925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
184, 108
               

               
Conread position:
               
65-412
               

               
Cow position:
               
chr1:21955518-21955161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
65-415
               

               
Cow position:
               
chr1:6228730-6228367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
66-410
               

               
Cow position:
               
chr1:8129111-8128770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
66-411
               

               
Cow position:
               
chr1:101860631-101860277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
67-235
               

               
Cow position:
               
chr1:80869972-80870141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 132
               

               
Conread position:
               
67-282
               

               
Cow position:
               
chr1:87440325-87440543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 210
               

               
Conread position:
               
67-390
               

               
Cow position:
               
chr1:2976138-2975800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
69-358
               

               
Cow position:
               
chr1:86073453-86073750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 150
               

               
Conread position:
               
70-395
               

               
Cow position:
               
chr1:97090187-97090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
71-314
               

               
Cow position:
               
chr1:89230367-89230124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
79, 51
               

               
Conread position:
               
72-235
               

               
Cow position:
               
chr1:40069104-40069262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
72-270
               

               
Cow position:
               
chr1:85301280-85301481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
74, 140
               

               
Conread position:
               
72-396
               

               
Cow position:
               
chr1:24407025-24406719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
72-403
               

               
Cow position:
               
chr1:39225063-39224737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
72-404
               

               
Cow position:
               
chr1:89448759-89449101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 227
               

               
Conread position:
               
72-406
               

               
Cow position:
               
chr1:29451780-29452128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
72-411
               

               
Cow position:
               
chr1:92997037-92996676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
76-330
               

               
Cow position:
               
chr1:41047434-41047180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
76-411
               

               
Cow position:
               
chr1:648189-648538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
77-339
               

               
Cow position:
               
chr1:85550211-85549947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 112
               

               
Conread position:
               
77-410
               

               
Cow position:
               
chr1:4243476-4243121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
77-411
               

               
Cow position:
               
chr1:78838665-78838997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 100
               

               
Conread position:
               
78-407
               

               
Cow position:
               
chr1:64572381-64572720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
79-401
               

               
Cow position:
               
chr1:79640421-79640089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
79-411
               

               
Cow position:
               
chr1:72105282-72105610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
80-407
               

               
Cow position:
               
chr1:66138189-66138528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
81-334
               

               
Cow position:
               
chr1:98511799-98512053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
82-411
               

               
Cow position:
               
chr1:11172246-11172578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
83-278
               

               
Cow position:
               
chr1:5539404-5539204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
85-407
               

               
Cow position:
               
chr1:35600423-35600084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 95
               

               
Conread position:
               
85-412
               

               
Cow position:
               
chr1:4701798-4701460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
85-412
               

               
Cow position:
               
chr1:5010965-5010622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
86-412
               

               
Cow position:
               
chr1:71666066-71665723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 135
               

               
Conread position:
               
88-392
               

               
Cow position:
               
chr1:17196752-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 217
               

               
Conread position:
               
89-395
               

               
Cow position:
               
chr1:70227814-70227497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
89-399
               

               
Cow position:
               
chr1:3607689-3607993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
89-408
               

               
Cow position:
               
chr1:47790785-47790461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
89-410
               

               
Cow position:
               
chr1:43311897-43311563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 214
               

               
Conread position:
               
89-411
               

               
Cow position:
               
chr1:20104147-20104476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
91-394
               

               
Cow position:
               
chr1:47288120-47288437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
91-402
               

               
Cow position:
               
chr1:89388224-89388544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
91-411
               

               
Cow position:
               
chr1:261598-261254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
92-402
               

               
Cow position:
               
chr1:26934379-26934067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
93-411
               

               
Cow position:
               
chr1:42541478-42541801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
94-409
               

               
Cow position:
               
chr1:6826405-6826084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
234, 50
               

               
Conread position:
               
96-269
               

               
Cow position:
               
chr1:58439115-58438939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
96-288
               

               
Cow position:
               
chr1:55818945-55819133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 83
               

               
Conread position:
               
98-280
               

               
Cow position:
               
chr1:91370121-91369935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
98-334
               

               
Cow position:
               
chr1:7023008-7023248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
54, 201
               

               
Conread position:
               
98-334
               

               
Cow position:
               
chr1:45553356-45553116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 201
               

               
Conread position:
               
98-396
               

               
Cow position:
               
chr1:98059937-98060254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
98-398
               

               
Cow position:
               
chr1:10716390-10716702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
98-409
               

               
Cow position:
               
chr1:81477981-81477655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr1:23999033-23998715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr1:41138244-41137939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr1:69551596-69551268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr1:53650902-53651190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
156, 27
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr1:56225681-56225992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr1:56618763-56618446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr1:78794337-78794026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
99-293
               

               
Cow position:
               
chr1:61543029-61542832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
99-385
               

               
Cow position:
               
chr1:65028418-65028705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
25, 204
               

               
Conread position:
               
99-397
               

               
Cow position:
               
chr1:14309146-14308833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr1:5637187-5636863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 221
               

               
Conread position:
               
99-412
               

               
Cow position:
               
chr1:22944137-22943814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
100-320
               

               
Cow position:
               
chr1:43822290-43822512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
100-334
               

               
Cow position:
               
chr1:67688691-67688456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:81580066-81580304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
79, 6
               

               
Conread position:
               
100-401
               

               
Cow position:
               
chr1:635795-635484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
100-402
               

               
Cow position:
               
chr1:27463021-27463329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
100-409
               

               
Cow position:
               
chr1:43855191-43855497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
101-401
               

               
Cow position:
               
chr1:85339295-85339577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
103-412
               

               
Cow position:
               
chr1:49825177-49824855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 205
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr1:61560828-61560642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
104-395
               

               
Cow position:
               
chr1:88397947-88397648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
104-410
               

               
Cow position:
               
chr1:67919041-67919337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
150, 27
               

               
Conread position:
               
107-395
               

               
Cow position:
               
chr1:71350826-71350530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
111-321
               

               
Cow position:
               
chr1:19227154-19226943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
111-326
               

               
Cow position:
               
chr1:77232667-77232459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
111-411
               

               
Cow position:
               
chr1:22823806-22824119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr1:102306243-102305946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
113-413
               

               
Cow position:
               
chr1:82513453-82513141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
37, 188
               

               
Conread position:
               
114-292
               

               
Cow position:
               
chr1:45670542-45670718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
115-396
               

               
Cow position:
               
chr1:79135188-79135474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 131
               

               
Conread position:
               
117-410
               

               
Cow position:
               
chr1:90904847-90904548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
120-336
               

               
Cow position:
               
chr1:4581417-4581202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
133, 48
               

               
Conread position:
               
120-340
               

               
Cow position:
               
chr1:50991844-50992068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
120-389
               

               
Cow position:
               
chr1:89158218-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 181
               

               
Conread position:
               
120-397
               

               
Cow position:
               
chr1:17875801-17875517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
124-402
               

               
Cow position:
               
chr1:100474145-100474440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
125-411
               

               
Cow position:
               
chr1:81481465-81481173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
129-411
               

               
Cow position:
               
chr1:30983568-30983282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 65
               

               
Conread position:
               
132-402
               

               
Cow position:
               
chr1:98583679-98583949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
132-409
               

               
Cow position:
               
chr1:52467223-52467493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 168
               

               
Conread position:
               
135-402
               

               
Cow position:
               
chr1:48206607-48206339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
140-411
               

               
Cow position:
               
chr1:46143529-46143254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
113, 48
               

               
Conread position:
               
143-415
               

               
Cow position:
               
chr1:3942274-3942007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
111, 45
               

               
Conread position:
               
144-334
               

               
Cow position:
               
chr1:95072267-95072459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
144-410
               

               
Cow position:
               
chr1:102753790-102754059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 56
               

               
Conread position:
               
144-411
               

               
Cow position:
               
chr1:54267996-54267728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
144-418
               

               
Cow position:
               
chr1:3965777-3966047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
192, 47
               

               
Conread position:
               
145-409
               

               
Cow position:
               
chr1:101507296-101507558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
145-412
               

               
Cow position:
               
chr1:80584369-80584639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
147-410
               

               
Cow position:
               
chr1:70175601-70175332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
148-402
               

               
Cow position:
               
chr1:97303303-97303052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
148-404
               

               
Cow position:
               
chr1:79003915-79004179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
164, 115
               

               
Conread position:
               
148-410
               

               
Cow position:
               
chr1:35671484-35671745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
183, 37
               

               
Conread position:
               
148-412
               

               
Cow position:
               
chr1:62235506-62235245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
148-412
               

               
Cow position:
               
chr1:78066597-78066332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
107, 53
               

               
Conread position:
               
149-409
               

               
Cow position:
               
chr1:33998699-33998957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
190, 149
               

               
Conread position:
               
150-394
               

               
Cow position:
               
chr1:64113851-64113607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 168
               

               
Conread position:
               
150-401
               

               
Cow position:
               
chr1:79146878-79146614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
157-414
               

               
Cow position:
               
chr1:500123-500389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 144
               

               
Conread position:
               
159-417
               

               
Cow position:
               
chr1:43286295-43286546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 139
               

               
Conread position:
               
160-402
               

               
Cow position:
               
chr1:97833663-97833898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr1:62997756-62998009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 126
               

               
Conread position:
               
166-415
               

               
Cow position:
               
chr1:85771968-85772218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
173-419
               

               
Cow position:
               
chr1:67654355-67654108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
174-410
               

               
Cow position:
               
chr1:79630937-79630710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
148, 54
               

               
Conread position:
               
179-315
               

               
Cow position:
               
chr1:82556439-82556304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
179-415
               

               
Cow position:
               
chr1:83092845-83093075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 70
               

               
Conread position:
               
180-411
               

               
Cow position:
               
chr1:98911979-98912218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
180-413
               

               
Cow position:
               
chr1:41027046-41027284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
70, 120
               

               
Conread position:
               
184-361
               

               
Cow position:
               
chr1:19962028-19962209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 108
               

               
Conread position:
               
185-411
               

               
Cow position:
               
chr1:45575910-45576130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
190-393
               

               
Cow position:
               
chr1:83025183-83024973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
190-409
               

               
Cow position:
               
chr1:55753234-55753011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
190-411
               

               
Cow position:
               
chr1:24530483-24530708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
193-411
               

               
Cow position:
               
chr1:40212348-40212138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
143, 67
               

               
Conread position:
               
194-409
               

               
Cow position:
               
chr1:45315651-45315423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
198-411
               

               
Cow position:
               
chr1:89158708-89158498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
201-394
               

               
Cow position:
               
chr1:62034836-62034642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
201-404
               

               
Cow position:
               
chr1:759426-759209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
201-410
               

               
Cow position:
               
chr1:53452529-53452730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
201-412
               

               
Cow position:
               
chr1:68688575-68688790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
202-408
               

               
Cow position:
               
chr1:242550-242759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
202-411
               

               
Cow position:
               
chr1:66752636-66752423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
205-410
               

               
Cow position:
               
chr1:95156968-95156756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
205-411
               

               
Cow position:
               
chr1:43499300-43499100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
208-396
               

               
Cow position:
               
chr1:61011180-61011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
208-402
               

               
Cow position:
               
chr1:7965852-7966048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
208-407
               

               
Cow position:
               
chr1:99605188-99604986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
209-402
               

               
Cow position:
               
chr1:6731180-6731380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
209-411
               

               
Cow position:
               
chr1:100573627-100573418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
213-407
               

               
Cow position:
               
chr1:93590582-93590384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
215-402
               

               
Cow position:
               
chr1:71946078-71945879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chr1:70483328-70483125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
218-409
               

               
Cow position:
               
chr1:55685969-55685770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
218-412
               

               
Cow position:
               
chr1:69378589-69378387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
223-412
               

               
Cow position:
               
chr1:82537944-82538138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
224-397
               

               
Cow position:
               
chr1:71636310-71636132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
224-412
               

               
Cow position:
               
chr1:23101691-23101886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
225-411
               

               
Cow position:
               
chr1:84787292-84787470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
226-407
               

               
Cow position:
               
chr1:524825-525012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
226-411
               

               
Cow position:
               
chr1:41022440-41022626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
227-411
               

               
Cow position:
               
chr1:50585860-50585666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
228-409
               

               
Cow position:
               
chr1:62469080-62469266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
228-415
               

               
Cow position:
               
chr1:4329881-4329696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
228-419
               

               
Cow position:
               
chr1:102523622-102523423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
229-370
               

               
Cow position:
               
chr1:21957524-21957384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 65
               

               
Conread position:
               
230-401
               

               
Cow position:
               
chr1:11708997-11708824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
231-410
               

               
Cow position:
               
chr1:91743437-91743251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
238-411
               

               
Cow position:
               
chr1:30028200-30028022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 60
               

               
Conread position:
               
241-402
               

               
Cow position:
               
chr1:19384422-19384256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
244-408
               

               
Cow position:
               
chr1:37470539-37470698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
245-411
               

               
Cow position:
               
chr1:53474195-53474358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
249-402
               

               
Cow position:
               
chr1:10470469-10470623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
249-402
               

               
Cow position:
               
chr1:77810716-77810562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 45
               

               
Conread position:
               
249-404
               

               
Cow position:
               
chr1:92363620-92363467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
94, 49
               

               
Conread position:
               
249-411
               

               
Cow position:
               
chr1:63460921-63461088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
249-415
               

               
Cow position:
               
chr1:32014239-32014405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
256-411
               

               
Cow position:
               
chr1:73644457-73644298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
259-409
               

               
Cow position:
               
chr1:80423679-80423524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
260-412
               

               
Cow position:
               
chr1:92578779-92578623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
262-407
               

               
Cow position:
               
chr1:70476695-70476547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
300-410
               

               
Cow position:
               
chr1:102611620-102611731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               
Show alignments to all cow chromosomes.