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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8045H10.3
        

               
Conread position:
               
1-177
               

               
Cow position:
               
chr29:6635876-6636062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr29:4805005-4805196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 145
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr29:4065859-4066053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr29:26734805-26735017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr29:8125823-8125591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr29:39642948-39643204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 209
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr29:4328206-4328449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr29:6775213-6774962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 146
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr29:11136117-11135845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr29:18212211-18211939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr29:29974813-29975100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr29:13372435-13372728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 206
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr29:25088525-25088807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 133
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr29:16195624-16195907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr29:28868404-28868710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr29:6925791-6926074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:868544-868846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 190
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:26318963-26319237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:26329986-26330270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr29:10456781-10456491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
61, 181
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr29:17333-17034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 153
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr29:6293696-6293400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr29:22714956-22714645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 189
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr29:40852704-40853006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr29:11562386-11562692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 185
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr29:17607188-17607497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 152
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr29:19821068-19821362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 184
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr29:20903516-20903211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr29:27858563-27858882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 232
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr29:10156518-10156209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr29:45005847-45005532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
52, 95
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr29:23984191-23983857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 316
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr29:10235343-10235033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr29:39567459-39567792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
56, 199
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr29:6844858-6844513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 207
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr29:8926687-8926342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 205
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr29:22175462-22175800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr29:11704894-11705236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 119
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr29:6286386-6286034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 199
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr29:9911949-9912302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 304
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr29:37599433-37599073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
56, 195
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr29:109481-109844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr29:3237586-3237177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 207
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr29:19389258-19389654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr29:21933341-21932947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 172
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr29:44236237-44236619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr29:34744845-34744444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr29:35406022-35405603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 266
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr29:11915588-11916014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 125
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr29:12784183-12783762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 198
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr29:40117340-40117758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 217
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr29:17109743-17110147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 180
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr29:34745883-34745467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
45, 225
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr29:16309522-16309920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 191
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr29:19756220-19756636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr29:21196879-21196453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 122
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr29:31928751-31929185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr29:32799931-32799504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 225
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr29:27668872-27668454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:4520107-4520531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 266
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:10653119-10653523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:19428435-19428851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 195
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:24624019-24624442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:28775683-28775265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 86
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:9709470-9709895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 122
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:12679926-12680360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 191
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:19949081-19949507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:22162479-22162062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 310
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:26778656-26779078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:29769574-29769152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 187
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:356098-356508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 86
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:4625221-4624795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:10058755-10058340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 313
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:13028229-13028653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 45
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:23844603-23845043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 120
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:23874231-23874665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:25737644-25737217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 310
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:28674914-28674499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:31594343-31593954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 64
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:35291871-35292289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:36530635-36531069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 186
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:41530621-41531054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr29:41811806-41811406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr29:22613203-22613625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr29:23697750-23698174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
60, 200
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr29:28197236-28196814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 117
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr29:5062903-5063352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 214
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr29:3395883-3396081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr29:3502830-3503026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr29:9686228-9686021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr29:35281273-35281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 198
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr29:26673133-26672835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 185
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr29:43495832-43496116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr29:94776-94490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 139
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr29:13639594-13639247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 170
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr29:42771434-42771758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 118
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:29056957-29057381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr29:2744499-2744066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 309
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr29:34773955-34773546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr29:26615952-26615538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 195
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr29:18085364-18085648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 71
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr29:2984658-2984969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 280
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr29:36216891-36217227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 174
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr29:25333681-25333344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
3-370
               

               
Cow position:
               
chr29:1556706-1557089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr29:4120619-4121043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr29:39111534-39111137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 41
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr29:21706601-21706208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr29:27816143-27816536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr29:4480402-4479966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 201
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr29:34360020-34359622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr29:35501875-35501463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 175
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr29:35458997-35458566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr29:45589810-45589524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 195
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr29:1395380-1395761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
7-397
               

               
Cow position:
               
chr29:22068969-22068552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 305
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr29:26986721-26986999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chr29:11398127-11397849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
8-327
               

               
Cow position:
               
chr29:22936058-22936383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
8-398
               

               
Cow position:
               
chr29:43328417-43328822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 219
               

               
Conread position:
               
8-407
               

               
Cow position:
               
chr29:1325216-1325645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
9-346
               

               
Cow position:
               
chr29:463874-463519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 139
               

               
Conread position:
               
9-402
               

               
Cow position:
               
chr29:28739408-28739821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
9-411
               

               
Cow position:
               
chr29:32733110-32733505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
12-402
               

               
Cow position:
               
chr29:23155033-23155429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
12-408
               

               
Cow position:
               
chr29:35677762-35677341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
12-409
               

               
Cow position:
               
chr29:40583580-40583986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 175
               

               
Conread position:
               
15-397
               

               
Cow position:
               
chr29:30440711-30441128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 197
               

               
Conread position:
               
16-245
               

               
Cow position:
               
chr29:42849014-42849253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 166
               

               
Conread position:
               
19-291
               

               
Cow position:
               
chr29:24578669-24578941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 51
               

               
Conread position:
               
19-409
               

               
Cow position:
               
chr29:6337452-6337851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
42, 208
               

               
Conread position:
               
20-293
               

               
Cow position:
               
chr29:44682300-44682025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
26-389
               

               
Cow position:
               
chr29:17154572-17154943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 286
               

               
Conread position:
               
42-402
               

               
Cow position:
               
chr29:10838772-10839133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
18, 137
               

               
Conread position:
               
45-388
               

               
Cow position:
               
chr29:38581802-38582150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
51-253
               

               
Cow position:
               
chr29:14484715-14484501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
51-292
               

               
Cow position:
               
chr29:41364941-41365187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
51-408
               

               
Cow position:
               
chr29:17462954-17462579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
51-408
               

               
Cow position:
               
chr29:34297734-34297371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
51-408
               

               
Cow position:
               
chr29:37618136-37618508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 102
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr29:11054027-11053742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 133
               

               
Conread position:
               
52-364
               

               
Cow position:
               
chr29:11646931-11647245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
57-292
               

               
Cow position:
               
chr29:15940794-15940552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
57-409
               

               
Cow position:
               
chr29:11433961-11434313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
57-412
               

               
Cow position:
               
chr29:25091951-25092309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 106
               

               
Conread position:
               
59-327
               

               
Cow position:
               
chr29:27588765-27589035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 5
               

               
Conread position:
               
59-329
               

               
Cow position:
               
chr29:26654196-26653930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
59-407
               

               
Cow position:
               
chr29:2055901-2056259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
59-408
               

               
Cow position:
               
chr29:25814994-25814635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr29:16272566-16272947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 253
               

               
Conread position:
               
60-179
               

               
Cow position:
               
chr29:21000485-21000608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-238
               

               
Cow position:
               
chr29:4334569-4334747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
60-243
               

               
Cow position:
               
chr29:2522416-2522591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
60-259
               

               
Cow position:
               
chr29:1124497-1124700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr29:24103703-24103476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 104
               

               
Conread position:
               
60-281
               

               
Cow position:
               
chr29:43009239-43009017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
60-281
               

               
Cow position:
               
chr29:44378577-44378352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
60-285
               

               
Cow position:
               
chr29:40166087-40166315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr29:87176-86932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 170
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr29:24252080-24252314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 134
               

               
Conread position:
               
60-312
               

               
Cow position:
               
chr29:5186653-5186396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
60-323
               

               
Cow position:
               
chr29:28446414-28446148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
89, 167
               

               
Conread position:
               
60-325
               

               
Cow position:
               
chr29:26416202-26416460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr29:23244038-23243759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 152
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chr29:32211214-32210950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
60-373
               

               
Cow position:
               
chr29:9718927-9718610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
60-382
               

               
Cow position:
               
chr29:27826368-27826679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
60-389
               

               
Cow position:
               
chr29:44988936-44988623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
60-397
               

               
Cow position:
               
chr29:14838965-14838618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr29:5409305-5408948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr29:28195671-28195339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr29:31674472-31674825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 234
               

               
Conread position:
               
60-406
               

               
Cow position:
               
chr29:5892692-5893044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr29:4875051-4874691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 242
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr29:22778336-22777982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr29:26275459-26275800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 38
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr29:709279-708950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 93
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr29:32963400-32963724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr29:732463-732812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr29:4085161-4085498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr29:43099900-43099547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr29:16609583-16609953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr29:19762118-19762466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 82
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr29:24952530-24952890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 129
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr29:12025629-12025275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 178
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr29:22029097-22028757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
60-415
               

               
Cow position:
               
chr29:16657530-16657896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
60-417
               

               
Cow position:
               
chr29:10818593-10818252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
61-282
               

               
Cow position:
               
chr29:26559398-26559178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
61-293
               

               
Cow position:
               
chr29:40960005-40959770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
61-334
               

               
Cow position:
               
chr29:28166370-28166103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
84, 125
               

               
Conread position:
               
61-410
               

               
Cow position:
               
chr29:17296974-17297340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 136
               

               
Conread position:
               
61-416
               

               
Cow position:
               
chr29:38580822-38581201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
62-377
               

               
Cow position:
               
chr29:29795544-29795211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
62-408
               

               
Cow position:
               
chr29:20910853-20910490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 136
               

               
Conread position:
               
62-408
               

               
Cow position:
               
chr29:29942889-29942526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 315
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr29:10018418-10018771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
63-285
               

               
Cow position:
               
chr29:29314810-29314581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
63-402
               

               
Cow position:
               
chr29:22690068-22690421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
64-282
               

               
Cow position:
               
chr29:1022139-1022364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
64-412
               

               
Cow position:
               
chr29:42364168-42363815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
185, 145
               

               
Conread position:
               
71-247
               

               
Cow position:
               
chr29:17301382-17301564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
71-396
               

               
Cow position:
               
chr29:35084370-35084035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
78-416
               

               
Cow position:
               
chr29:24045850-24046205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 231
               

               
Conread position:
               
79-292
               

               
Cow position:
               
chr29:27329753-27329971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
73, 110
               

               
Conread position:
               
82-330
               

               
Cow position:
               
chr29:4002760-4003006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
82-393
               

               
Cow position:
               
chr29:31943744-31944053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
85-395
               

               
Cow position:
               
chr29:34359114-34358792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
5, 114
               

               
Conread position:
               
85-411
               

               
Cow position:
               
chr29:26259343-26259680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
89-333
               

               
Cow position:
               
chr29:29176744-29176499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
98-412
               

               
Cow position:
               
chr29:30227393-30227076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 96
               

               
Conread position:
               
99-280
               

               
Cow position:
               
chr29:27846350-27846530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
149, 48
               

               
Conread position:
               
99-402
               

               
Cow position:
               
chr29:23389675-23389372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
99-411
               

               
Cow position:
               
chr29:12626098-12625795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 202
               

               
Conread position:
               
108-402
               

               
Cow position:
               
chr29:1007706-1008014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 119
               

               
Conread position:
               
108-411
               

               
Cow position:
               
chr29:7310578-7310866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
109-411
               

               
Cow position:
               
chr29:1614816-1615130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
111-408
               

               
Cow position:
               
chr29:8862585-8862299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
111-409
               

               
Cow position:
               
chr29:26477432-26477745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 197
               

               
Conread position:
               
127-411
               

               
Cow position:
               
chr29:4492352-4492635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
127-418
               

               
Cow position:
               
chr29:21665996-21666294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
129-416
               

               
Cow position:
               
chr29:7624087-7624375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
25, 147
               

               
Conread position:
               
138-291
               

               
Cow position:
               
chr29:18012474-18012636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
143-389
               

               
Cow position:
               
chr29:23825292-23825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 170
               

               
Conread position:
               
144-326
               

               
Cow position:
               
chr29:23220572-23220390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 141
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chr29:36952370-36952112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
144-410
               

               
Cow position:
               
chr29:20770273-20770546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
47, 151
               

               
Conread position:
               
146-412
               

               
Cow position:
               
chr29:38980139-38979876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
148-329
               

               
Cow position:
               
chr29:38978463-38978646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
148-372
               

               
Cow position:
               
chr29:32176613-32176832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
148-394
               

               
Cow position:
               
chr29:29324480-29324234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
190, 24
               

               
Conread position:
               
148-407
               

               
Cow position:
               
chr29:30548707-30548973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
100, 149
               

               
Conread position:
               
148-407
               

               
Cow position:
               
chr29:44139312-44139046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr29:29923642-29923373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
149-398
               

               
Cow position:
               
chr29:41112940-41112700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
152-411
               

               
Cow position:
               
chr29:23825606-23825865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 56
               

               
Conread position:
               
158-410
               

               
Cow position:
               
chr29:22167138-22166885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
169-409
               

               
Cow position:
               
chr29:44991471-44991224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
170-411
               

               
Cow position:
               
chr29:4070587-4070824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 5
               

               
Conread position:
               
177-419
               

               
Cow position:
               
chr29:22735145-22734895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 114
               

               
Conread position:
               
185-411
               

               
Cow position:
               
chr29:16278956-16279180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
186-394
               

               
Cow position:
               
chr29:32197666-32197880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
189-376
               

               
Cow position:
               
chr29:22723573-22723767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
66, 108
               

               
Conread position:
               
190-395
               

               
Cow position:
               
chr29:17804508-17804717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
190-408
               

               
Cow position:
               
chr29:26540567-26540340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 111
               

               
Conread position:
               
197-413
               

               
Cow position:
               
chr29:19125303-19125533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
201-401
               

               
Cow position:
               
chr29:21592692-21592891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
88, 94
               

               
Conread position:
               
201-403
               

               
Cow position:
               
chr29:6686649-6686456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
202-395
               

               
Cow position:
               
chr29:40791295-40791484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
136, 38
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr29:1011595-1011403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
202-401
               

               
Cow position:
               
chr29:36357114-36357321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 96
               

               
Conread position:
               
202-409
               

               
Cow position:
               
chr29:39038285-39038068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 100
               

               
Conread position:
               
202-410
               

               
Cow position:
               
chr29:9378622-9378837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
202-411
               

               
Cow position:
               
chr29:5789014-5789218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 62
               

               
Conread position:
               
202-411
               

               
Cow position:
               
chr29:9310585-9310806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
203-402
               

               
Cow position:
               
chr29:29308586-29308388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
203-411
               

               
Cow position:
               
chr29:31651397-31651605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
208-408
               

               
Cow position:
               
chr29:36781313-36781110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
208-409
               

               
Cow position:
               
chr29:19363702-19363909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
208-410
               

               
Cow position:
               
chr29:22729559-22729767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
210-396
               

               
Cow position:
               
chr29:4423446-4423262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
213-402
               

               
Cow position:
               
chr29:15797948-15798145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
213-415
               

               
Cow position:
               
chr29:15796482-15796692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
214-412
               

               
Cow position:
               
chr29:43088308-43088510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 84
               

               
Conread position:
               
217-406
               

               
Cow position:
               
chr29:40351075-40350883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
222-412
               

               
Cow position:
               
chr29:14576864-14577061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
223-410
               

               
Cow position:
               
chr29:32215713-32215906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
224-415
               

               
Cow position:
               
chr29:7444054-7443860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
230-402
               

               
Cow position:
               
chr29:936220-936397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
238-416
               

               
Cow position:
               
chr29:17282089-17282269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
242-410
               

               
Cow position:
               
chr29:33143325-33143155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
252-411
               

               
Cow position:
               
chr29:24660723-24660880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
257-408
               

               
Cow position:
               
chr29:40112425-40112579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
269-407
               

               
Cow position:
               
chr29:25669149-25669282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
269-411
               

               
Cow position:
               
chr29:44985327-44985464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               
Show alignments to all cow chromosomes.