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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8045H10.3
        

               
Conread position:
               
1-148
               

               
Cow position:
               
chr6:48425508-48425350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr6:53519810-53519624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr6:32210814-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr6:9733018-9732839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr6:15923186-15922992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr6:16411008-16411221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:53731334-53731581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 194
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr6:34031481-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
56, 196
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:6460352-6460605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
54, 201
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr6:3545517-3545762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr6:60239579-60239328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 203
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:38233796-38234028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr6:68049248-68049507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 172
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr6:14850901-14850637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 220
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr6:21542133-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr6:44098897-44099171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 197
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:8804715-8804439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 191
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr6:62925180-62924901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
52, 178
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:53401182-53401462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 106
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr6:38614637-38614925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr6:54140626-54140911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr6:54864854-54864546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 267
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:8788224-8787917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 176
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:9751227-9750937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
60, 147
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:18049213-18048904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 189
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:19681711-19681404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:23248150-23247845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 149
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:31635874-31635563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:49002912-49002619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 192
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:54369087-54368783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 183
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:66131121-66131427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 209
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:66874175-66874472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr6:130352-130032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 249
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:4864727-4864408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
59, 200
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:31525861-31526185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 194
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr6:54600179-54600487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:16423512-16423847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
60, 291
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr6:60350486-60350145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
52, 316
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr6:66531992-66531671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr6:21869832-21869496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 305
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr6:28977216-28976887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 124
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr6:51463803-51463481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr6:7131058-7130723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr6:1886850-1886510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr6:16706820-16707170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 191
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr6:9452960-9452610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 187
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr6:6400761-6401111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 312
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr6:47799111-47799454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
52, 183
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr6:51674731-51675067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 169
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr6:59069815-59069459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 317
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr6:13040266-13040606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 167
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr6:47339535-47339191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr6:21110783-21111118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr6:40713689-40713317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 203
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr6:21737069-21736687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr6:35842470-35842875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 222
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr6:38641311-38641709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
60, 261
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr6:52412667-52413077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 215
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr6:28482828-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 193
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr6:45690781-45690393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr6:47305152-47305567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 294
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr6:51835213-51835623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 236
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:41733440-41733862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 218
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:54132631-54133038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:46292525-46292127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr6:58732501-58732070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:60144364-60143968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
147, 62
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr6:17414638-17414216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr6:21231349-21231745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 142
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr6:32867393-32866987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr6:34196335-34195928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 185
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr6:67950772-67951191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 138
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr6:5609627-5609207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 145
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr6:19401675-19402080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 129
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr6:29239757-29240167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
59, 218
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr6:38207683-38207250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 181
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr6:6264456-6264889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 313
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr6:49398803-49398392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 189
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr6:55546347-55545933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr6:53178450-53178866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 203
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:10176490-10176058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
60, 194
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:13687998-13687575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:15938039-15937611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:16700072-16700495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 205
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:38440995-38441421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr6:6060744-6060332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr6:21062070-21061649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
58, 257
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr6:66433761-66434196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr6:21534872-21535283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
56, 167
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr6:23695810-23696237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 309
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr6:36196027-36196445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 190
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr6:56849831-56850260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 266
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:611374-611787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:5095737-5095298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 207
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:6067864-6067469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
60, 68
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:7190306-7189887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 97
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:9008798-9008381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 183
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:10400082-10399664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 194
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:12337797-12338234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:15301004-15300596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 161
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:17997502-17997073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 203
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:18988029-18988435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 252
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:24110117-24110528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:35181440-35181010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:36202641-36203065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:36470750-36470334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
60, 310
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:45065193-45064791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:48281808-48282239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
52, 156
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:50746794-50747248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:53024985-53024567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 141
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:54490927-54490502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
42, 210
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:57405311-57404892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:61113563-61114009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
42, 382
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:61515385-61514954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 209
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:64431752-64432177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:66363431-66362988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:67187504-67187922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:6063466-6063047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:26728714-26728299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 194
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:44078334-44078760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 123
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:55475059-55475482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 232
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr6:29210314-29210723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 186
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr6:48567529-48567113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 153
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr6:63720012-63720438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 310
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr6:2012833-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr6:40138891-40138710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 115
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr6:56842973-56843267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 109
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr6:6343240-6343567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
55, 179
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr6:35613600-35613278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
57, 132
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr6:37634603-37634943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 315
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr6:9736828-9736500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr6:60859492-60859084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 190
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr6:19695620-19696032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr6:12092170-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr6:63047390-63047803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
58, 328
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr6:53460758-53460343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 313
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr6:23532477-23532881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 138
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr6:38853844-38853419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr6:21456876-21456437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 198
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr6:2547055-2547504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr6:40032006-40032423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 201
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr6:49421963-49421552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr6:10612680-10613075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 96
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr6:45160477-45160280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr6:5462234-5462047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 149
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:16737835-16738049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 120
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr6:25773566-25773327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 149
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr6:49410874-49410619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
54, 139
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr6:1944541-1944808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr6:60442233-60442515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr6:20098149-20097820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 312
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr6:25407577-25407238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 182
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr6:38218487-38218820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
3-329
               

               
Cow position:
               
chr6:46570933-46571261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr6:8209774-8209449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr6:40774533-40774125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 323
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr6:8637090-8637489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 205
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr6:26915145-26915541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 186
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr6:445126-445542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr6:46860353-46859944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 185
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr6:45596720-45596317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 203
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr6:46557871-46558284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr6:38771109-38771502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 188
               

               
Conread position:
               
3-401
               

               
Cow position:
               
chr6:46465643-46466052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 192
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr6:3952337-3952756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr6:14949666-14949251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 186
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr6:52478612-52478170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 323
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr6:32121726-32122137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr6:47519861-47520296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 318
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr6:32269055-32268643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr6:7539389-7539817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr6:14914421-14913990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr6:39358526-39358099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 111
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr6:53933034-53932601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 138
               

               
Conread position:
               
3-412
               

               
Cow position:
               
chr6:11192637-11192235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
3-412
               

               
Cow position:
               
chr6:59015746-59015334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr6:44194730-44194309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 164
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:24004363-24004768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chr6:10106181-10105732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 324
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr6:24515377-24515168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr6:25008530-25008829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr6:33302228-33302636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
55, 124
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr6:4383308-4383716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 177
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr6:37149009-37149425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chr6:15305398-15305815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 153
               

               
Conread position:
               
4-412
               

               
Cow position:
               
chr6:61269146-61269562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
4-413
               

               
Cow position:
               
chr6:35990407-35989993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr6:60057839-60057534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
8-401
               

               
Cow position:
               
chr6:54365505-54365095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 306
               

               
Conread position:
               
9-181
               

               
Cow position:
               
chr6:10635997-10636182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 171
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr6:28318230-28318515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr6:52901062-52901359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
9-327
               

               
Cow position:
               
chr6:53651862-53652194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
9-410
               

               
Cow position:
               
chr6:31564512-31564109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
12-259
               

               
Cow position:
               
chr6:33865271-33865033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
12-281
               

               
Cow position:
               
chr6:5302580-5302311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
12-401
               

               
Cow position:
               
chr6:47574729-47575125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 177
               

               
Conread position:
               
13-382
               

               
Cow position:
               
chr6:8125157-8125544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
14-394
               

               
Cow position:
               
chr6:60819341-60819742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 191
               

               
Conread position:
               
15-292
               

               
Cow position:
               
chr6:65259640-65259371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
15-411
               

               
Cow position:
               
chr6:65264708-65264307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
46, 182
               

               
Conread position:
               
15-412
               

               
Cow position:
               
chr6:12668934-12669343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
38, 189
               

               
Conread position:
               
16-408
               

               
Cow position:
               
chr6:47355652-47356067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
18-281
               

               
Cow position:
               
chr6:16764812-16764537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
19-247
               

               
Cow position:
               
chr6:54287911-54288149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
19-327
               

               
Cow position:
               
chr6:54991171-54990847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
19-397
               

               
Cow position:
               
chr6:39093575-39093975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 291
               

               
Conread position:
               
19-409
               

               
Cow position:
               
chr6:11246595-11247010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 240
               

               
Conread position:
               
28-353
               

               
Cow position:
               
chr6:48112044-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
35-411
               

               
Cow position:
               
chr6:3595641-3596038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
27, 134
               

               
Conread position:
               
36-409
               

               
Cow position:
               
chr6:19292660-19293040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
37-325
               

               
Cow position:
               
chr6:61168633-61168907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 102
               

               
Conread position:
               
41-230
               

               
Cow position:
               
chr6:19351290-19351100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 148
               

               
Conread position:
               
41-397
               

               
Cow position:
               
chr6:44867679-44867316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
42-376
               

               
Cow position:
               
chr6:50984087-50984434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 133
               

               
Conread position:
               
49-343
               

               
Cow position:
               
chr6:12845252-12845543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
51-278
               

               
Cow position:
               
chr6:16316178-16316422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
51-333
               

               
Cow position:
               
chr6:46283126-46282844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 83
               

               
Conread position:
               
51-382
               

               
Cow position:
               
chr6:54036263-54035925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
51-402
               

               
Cow position:
               
chr6:38609840-38610209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
51-407
               

               
Cow position:
               
chr6:20157201-20157575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
51-407
               

               
Cow position:
               
chr6:34251415-34251058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
51-410
               

               
Cow position:
               
chr6:32287512-32287874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chr6:6965513-6965151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
51-412
               

               
Cow position:
               
chr6:31847348-31846999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
52-281
               

               
Cow position:
               
chr6:377006-377234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
52-294
               

               
Cow position:
               
chr6:582398-582151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
52-409
               

               
Cow position:
               
chr6:25615227-25614848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
53-404
               

               
Cow position:
               
chr6:60118024-60118379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
53-411
               

               
Cow position:
               
chr6:21399879-21399510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
53-411
               

               
Cow position:
               
chr6:23402115-23401751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
57-368
               

               
Cow position:
               
chr6:67323196-67323507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
57-396
               

               
Cow position:
               
chr6:60739895-60740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
59-240
               

               
Cow position:
               
chr6:9323044-9323214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
59-252
               

               
Cow position:
               
chr6:44984211-44984406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 121
               

               
Conread position:
               
59-401
               

               
Cow position:
               
chr6:10225757-10225416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
93, 126
               

               
Conread position:
               
59-407
               

               
Cow position:
               
chr6:36652301-36652639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 152
               

               
Conread position:
               
59-408
               

               
Cow position:
               
chr6:1703700-1704035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
225, 107
               

               
Conread position:
               
59-408
               

               
Cow position:
               
chr6:16746221-16746587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr6:17704700-17705078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr6:55209438-55209804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
60-224
               

               
Cow position:
               
chr6:415981-416155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 118
               

               
Conread position:
               
60-232
               

               
Cow position:
               
chr6:61137258-61137432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
60-252
               

               
Cow position:
               
chr6:18961633-18961439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 123
               

               
Conread position:
               
60-261
               

               
Cow position:
               
chr6:12829339-12829136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
60-265
               

               
Cow position:
               
chr6:24962032-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
174, 59
               

               
Conread position:
               
60-277
               

               
Cow position:
               
chr6:7989529-7989310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
60-281
               

               
Cow position:
               
chr6:55763737-55763962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr6:1499525-1499754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
60-284
               

               
Cow position:
               
chr6:58073931-58074160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-285
               

               
Cow position:
               
chr6:15022675-15022434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
60-285
               

               
Cow position:
               
chr6:61608394-61608625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
60-287
               

               
Cow position:
               
chr6:12543050-12542815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-290
               

               
Cow position:
               
chr6:47640550-47640314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
89, 134
               

               
Conread position:
               
60-292
               

               
Cow position:
               
chr6:56376469-56376229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 139
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr6:14958462-14958219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr6:57164309-57164550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
60-314
               

               
Cow position:
               
chr6:50975941-50976189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
188, 68
               

               
Conread position:
               
60-320
               

               
Cow position:
               
chr6:12551153-12551417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
60-331
               

               
Cow position:
               
chr6:42565572-42565845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr6:21234927-21235204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chr6:35993464-35993746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chr6:54867399-54867680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chr6:67214627-67214912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 244
               

               
Conread position:
               
60-368
               

               
Cow position:
               
chr6:57571360-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
60-393
               

               
Cow position:
               
chr6:5114162-5113821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
89, 115
               

               
Conread position:
               
60-393
               

               
Cow position:
               
chr6:45388213-45388547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
60-394
               

               
Cow position:
               
chr6:16261669-16262008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
60-396
               

               
Cow position:
               
chr6:63252040-63251692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
52, 119
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr6:18080625-18080281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr6:19996504-19996850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr6:38640114-38640466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 241
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chr6:54854132-54854485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
60-404
               

               
Cow position:
               
chr6:24031262-24031600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 82
               

               
Conread position:
               
60-404
               

               
Cow position:
               
chr6:24781676-24781314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr6:17313617-17313978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chr6:50467018-50467378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr6:8562603-8562955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 320
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr6:15243139-15243502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr6:15447321-15446952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 249
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr6:57546331-57545988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr6:15242719-15243081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 63
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr6:32125954-32126294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr6:51581370-51581013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 237
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr6:24468510-24468156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr6:17090482-17090824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr6:19446142-19446497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
206, 77
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr6:21004551-21004924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr6:48803754-48803396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr6:55282403-55282048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr6:120126-120482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr6:8965976-8966333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr6:9219156-9219508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr6:29484973-29485328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 113
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr6:35725978-35726335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 140
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chr6:44566299-44566671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
60-413
               

               
Cow position:
               
chr6:13367176-13367529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
61-293
               

               
Cow position:
               
chr6:899406-899172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
84, 134
               

               
Conread position:
               
61-326
               

               
Cow position:
               
chr6:58597620-58597354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 87
               

               
Conread position:
               
61-334
               

               
Cow position:
               
chr6:37199651-37199377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 198
               

               
Conread position:
               
61-401
               

               
Cow position:
               
chr6:7128516-7128170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
61-407
               

               
Cow position:
               
chr6:33206632-33206969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
61-408
               

               
Cow position:
               
chr6:2607500-2607849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
61-410
               

               
Cow position:
               
chr6:19264612-19264258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 116
               

               
Conread position:
               
61-411
               

               
Cow position:
               
chr6:31535683-31535329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 234
               

               
Conread position:
               
62-410
               

               
Cow position:
               
chr6:50577409-50577758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
62-410
               

               
Cow position:
               
chr6:65870913-65871273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 227
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr6:35471634-35471269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 214
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr6:48988322-48988678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 101
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr6:61631724-61631364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 128
               

               
Conread position:
               
64-412
               

               
Cow position:
               
chr6:22850358-22850007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
64-412
               

               
Cow position:
               
chr6:50090532-50090890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
65-395
               

               
Cow position:
               
chr6:46173370-46173030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 135
               

               
Conread position:
               
65-407
               

               
Cow position:
               
chr6:10039609-10039966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
67-287
               

               
Cow position:
               
chr6:30973942-30974157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
67-408
               

               
Cow position:
               
chr6:17557271-17557615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
34, 190
               

               
Conread position:
               
67-409
               

               
Cow position:
               
chr6:59603317-59602974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
68-411
               

               
Cow position:
               
chr6:54208248-54207888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
70-251
               

               
Cow position:
               
chr6:37376624-37376438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chr6:59718691-59718935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 121
               

               
Conread position:
               
72-344
               

               
Cow position:
               
chr6:51968964-51969248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
72-390
               

               
Cow position:
               
chr6:27240111-27239781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 107
               

               
Conread position:
               
72-390
               

               
Cow position:
               
chr6:61524308-61523981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
72-411
               

               
Cow position:
               
chr6:26043647-26043979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 107
               

               
Conread position:
               
73-396
               

               
Cow position:
               
chr6:7119714-7119401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
181, 52
               

               
Conread position:
               
76-401
               

               
Cow position:
               
chr6:1429538-1429868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
76-409
               

               
Cow position:
               
chr6:58370652-58370989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
76-411
               

               
Cow position:
               
chr6:60783767-60784115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
76-412
               

               
Cow position:
               
chr6:60274107-60273766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chr6:17794855-17794610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
82-326
               

               
Cow position:
               
chr6:66375425-66375180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
89-411
               

               
Cow position:
               
chr6:37332019-37332354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
91-411
               

               
Cow position:
               
chr6:143454-143135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
93-408
               

               
Cow position:
               
chr6:13565000-13565326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
98-339
               

               
Cow position:
               
chr6:23466108-23465868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
98-368
               

               
Cow position:
               
chr6:2623703-2623968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
99-407
               

               
Cow position:
               
chr6:33509712-33510029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 109
               

               
Conread position:
               
99-411
               

               
Cow position:
               
chr6:4468690-4469010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
99-412
               

               
Cow position:
               
chr6:16288130-16287822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
100-404
               

               
Cow position:
               
chr6:41375693-41376008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr6:22985935-22985613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 245
               

               
Conread position:
               
101-402
               

               
Cow position:
               
chr6:694223-693910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
101-402
               

               
Cow position:
               
chr6:18955141-18954857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
103-415
               

               
Cow position:
               
chr6:17068723-17068407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
107-409
               

               
Cow position:
               
chr6:18118122-18117807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
43, 198
               

               
Conread position:
               
108-238
               

               
Cow position:
               
chr6:31228699-31228826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
111-330
               

               
Cow position:
               
chr6:49437278-49437489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr6:67643757-67643478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
111-402
               

               
Cow position:
               
chr6:9302782-9302488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
111-407
               

               
Cow position:
               
chr6:37395474-37395162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
111-408
               

               
Cow position:
               
chr6:6724437-6724750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
112-258
               

               
Cow position:
               
chr6:67615496-67615344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
113-410
               

               
Cow position:
               
chr6:60468173-60468474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
114-411
               

               
Cow position:
               
chr6:5845235-5844924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
115-293
               

               
Cow position:
               
chr6:59770165-59770345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
127-312
               

               
Cow position:
               
chr6:32853140-32853326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
128-393
               

               
Cow position:
               
chr6:68816117-68816396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
128-402
               

               
Cow position:
               
chr6:50504409-50504691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
130-393
               

               
Cow position:
               
chr6:2584894-2585167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
131-408
               

               
Cow position:
               
chr6:3350973-3351269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
19, 181
               

               
Conread position:
               
132-382
               

               
Cow position:
               
chr6:36921017-36920760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chr6:2078865-2078572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
18, 176
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chr6:55417572-55417289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
140-411
               

               
Cow position:
               
chr6:67728333-67728622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
142-409
               

               
Cow position:
               
chr6:67451677-67451422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
143-411
               

               
Cow position:
               
chr6:41656074-41655811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
106, 162
               

               
Conread position:
               
144-321
               

               
Cow position:
               
chr6:60266211-60266035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
144-325
               

               
Cow position:
               
chr6:32517129-32516958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
144-390
               

               
Cow position:
               
chr6:34119384-34119140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chr6:19259374-19259117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 154
               

               
Conread position:
               
144-411
               

               
Cow position:
               
chr6:69334341-69334072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
112, 161
               

               
Conread position:
               
148-402
               

               
Cow position:
               
chr6:62056587-62056846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
100, 149
               

               
Conread position:
               
148-410
               

               
Cow position:
               
chr6:48097627-48097360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr6:68685529-68685784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
148-412
               

               
Cow position:
               
chr6:67451398-67451128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 149
               

               
Conread position:
               
152-332
               

               
Cow position:
               
chr6:53089986-53090167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 145
               

               
Conread position:
               
152-409
               

               
Cow position:
               
chr6:21293518-21293256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
154-409
               

               
Cow position:
               
chr6:53546016-53546271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
154-412
               

               
Cow position:
               
chr6:13653331-13653591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
156-321
               

               
Cow position:
               
chr6:4702842-4702676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
94, 85
               

               
Conread position:
               
161-410
               

               
Cow position:
               
chr6:66978855-66979114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
151, 107
               

               
Conread position:
               
163-411
               

               
Cow position:
               
chr6:47885032-47884801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
165-411
               

               
Cow position:
               
chr6:1475335-1475581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 136
               

               
Conread position:
               
170-411
               

               
Cow position:
               
chr6:42034768-42035014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
175-402
               

               
Cow position:
               
chr6:67069815-67069580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
176-412
               

               
Cow position:
               
chr6:6168688-6168932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
177-402
               

               
Cow position:
               
chr6:57079431-57079661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
177-408
               

               
Cow position:
               
chr6:29775624-29775859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
177-411
               

               
Cow position:
               
chr6:54127805-54127577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
178-408
               

               
Cow position:
               
chr6:66839201-66839434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 50
               

               
Conread position:
               
179-402
               

               
Cow position:
               
chr6:58725374-58725602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
179-402
               

               
Cow position:
               
chr6:61109791-61110017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
180-409
               

               
Cow position:
               
chr6:21470424-21470190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
186-334
               

               
Cow position:
               
chr6:61569643-61569789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
187-409
               

               
Cow position:
               
chr6:30023897-30024119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
190-401
               

               
Cow position:
               
chr6:12623530-12623743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
190-402
               

               
Cow position:
               
chr6:1941817-1941599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 117
               

               
Conread position:
               
197-401
               

               
Cow position:
               
chr6:60850722-60850933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
201-408
               

               
Cow position:
               
chr6:1866758-1866972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
201-409
               

               
Cow position:
               
chr6:12761305-12761522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 77
               

               
Conread position:
               
203-409
               

               
Cow position:
               
chr6:51933582-51933781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
208-402
               

               
Cow position:
               
chr6:16090936-16091132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
208-410
               

               
Cow position:
               
chr6:23938093-23938294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
208-411
               

               
Cow position:
               
chr6:5601735-5601944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
210-401
               

               
Cow position:
               
chr6:30825731-30825543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
211-408
               

               
Cow position:
               
chr6:41226794-41226606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
213-402
               

               
Cow position:
               
chr6:21083503-21083306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
213-415
               

               
Cow position:
               
chr6:3936822-3937033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
215-401
               

               
Cow position:
               
chr6:58173384-58173576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
215-407
               

               
Cow position:
               
chr6:41657307-41657505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
220-393
               

               
Cow position:
               
chr6:40682618-40682442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
102, 78
               

               
Conread position:
               
220-412
               

               
Cow position:
               
chr6:63168719-63168518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
223-414
               

               
Cow position:
               
chr6:21350985-21350784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
225-402
               

               
Cow position:
               
chr6:36537311-36537128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
227-392
               

               
Cow position:
               
chr6:24905679-24905847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
231-401
               

               
Cow position:
               
chr6:32006399-32006222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
237-408
               

               
Cow position:
               
chr6:34423397-34423219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
240-394
               

               
Cow position:
               
chr6:2757852-2758009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
240-410
               

               
Cow position:
               
chr6:37994273-37994447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
245-411
               

               
Cow position:
               
chr6:34463515-34463346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
249-399
               

               
Cow position:
               
chr6:63182365-63182517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
249-404
               

               
Cow position:
               
chr6:8726754-8726914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
250-411
               

               
Cow position:
               
chr6:7291393-7291555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
251-402
               

               
Cow position:
               
chr6:38032936-38033093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
251-412
               

               
Cow position:
               
chr6:4699786-4699950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
253-394
               

               
Cow position:
               
chr6:54406719-54406576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
255-411
               

               
Cow position:
               
chr6:43540167-43540018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
264-411
               

               
Cow position:
               
chr6:66058616-66058465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 34
               
Show alignments to all cow chromosomes.