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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8045H10.3
        

               
Conread position:
               
1-156
               

               
Cow position:
               
chrX:17908484-17908321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 142
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chrX:46430058-46429887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chrX:9997534-9997361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chrX:4942950-4942781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chrX:2206744-2206576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chrX:23497865-23497677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chrX:42339136-42338945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:17497896-17498092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chrX:35409465-35409666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
48, 129
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chrX:20582830-20583038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chrX:41743712-41743950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:15139744-15139497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:19015242-19015487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:35681146-35681392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 46
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:42461946-42461694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 205
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chrX:28845645-28845887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:23970188-23970438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chrX:7718654-7718908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
54, 199
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chrX:41167165-41166903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 205
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:678768-678491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:19188736-19188995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 201
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:26876082-26875817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:34192477-34192734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chrX:13265820-13265566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 162
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chrX:6265786-6265508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
148, 87
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chrX:6278706-6278407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:37843520-37843810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 175
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:44873752-44873468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:43567739-43568013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:26440980-26440688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 201
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:27680201-27680495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 131
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:45113428-45113716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 78
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:4865051-4865333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 136
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:7571706-7572005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:619208-618900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 292
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chrX:9416893-9416577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 188
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chrX:15814897-15815190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:1514601-1514312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 195
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:7497043-7497349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:28866193-28865899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:11073389-11073083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:11082814-11082514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 143
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:26625877-26625563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 159
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:37910252-37910553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:38936500-38936808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:917572-917242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chrX:42171500-42171168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 221
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:18695120-18694795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:37232209-37232542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 191
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:5017608-5017282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 249
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:17725774-17726114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 193
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chrX:34502718-34503065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 203
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chrX:40557876-40557533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 304
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:11717983-11717635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 117
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:23091681-23092021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
56, 118
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:27394214-27393878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:6690448-6690107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 134
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chrX:8797047-8797411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 264
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:17888606-17888244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:21064086-21064486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
41, 129
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:37119399-37119789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:47344094-47344513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
52, 133
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chrX:16762572-16762984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 147
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chrX:9635381-9634975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chrX:28013640-28013223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chrX:20151650-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
58, 271
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chrX:20887845-20887430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:37489530-37489949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
58, 141
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chrX:34543587-34544008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chrX:9201346-9201767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 203
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chrX:38963906-38964321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chrX:42381300-42380888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 85
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chrX:17794785-17795205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 150
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:7721784-7722203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
55, 269
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:9425942-9425533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:13177665-13177255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 184
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:21593083-21593520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 202
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:33466413-33466851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:38549248-38549676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:151701-152135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:9252378-9251933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 205
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:12249606-12250045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:27432119-27431694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 197
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:31729255-31729667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:31949131-31948704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 203
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:38935081-38935509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:41238566-41238132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
60, 231
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:42492715-42492291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 187
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:46073021-46072600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
51, 194
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:46587617-46588050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 208
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:1499469-1499885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 201
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:11655888-11656309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 175
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:30338124-30337723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:41122871-41123275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 157
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:22074600-22075027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 158
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:29542419-29541996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 294
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:34411640-34412080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 315
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:37072205-37072618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 151
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:42247384-42246949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 113
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:5118685-5118265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:6544056-6544478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:12290535-12290951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 141
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:12980031-12979602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 159
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:20340091-20339662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:22482889-22482456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 161
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:23563997-23563557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 193
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:25816096-25815666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:27174795-27175233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 260
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:27446488-27446916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 201
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:29120856-29121254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 183
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:30963072-30962642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
42, 163
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:31443022-31442606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:34441651-34441220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:35413432-35413827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:40567399-40567838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 156
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:43114971-43115382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:45430217-45429798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chrX:4633051-4632620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
63, 186
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chrX:10866068-10865636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 187
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chrX:11614521-11614909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 34
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chrX:23514218-23513768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chrX:33855433-33854992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 307
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chrX:40826947-40826516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:27442755-27442301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:35268690-35269093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chrX:38094726-38094288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chrX:39558547-39558121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 287
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chrX:17662797-17662382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
59, 221
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chrX:40692938-40692532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chrX:14973935-14973517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chrX:38852996-38853451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 175
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chrX:38642057-38642485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 149
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chrX:7646060-7646479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 141
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chrX:45015387-45015563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chrX:30833045-30832835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 200
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chrX:29509643-29509424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chrX:27772159-27771876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chrX:21004482-21004780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chrX:45414499-45414143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 202
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chrX:878571-878218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chrX:13647983-13647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 208
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chrX:11844442-11844036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chrX:37574657-37575047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 130
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chrX:6413847-6414265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 188
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chrX:41879134-41878704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
55, 146
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chrX:15147386-15146962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chrX:47248984-47248556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
55, 202
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chrX:35388104-35387909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chrX:32128179-32127950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chrX:4750499-4750258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 34
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chrX:42874779-42875039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
54, 198
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chrX:6234647-6234390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chrX:12405575-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chrX:34663042-34662754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 203
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chrX:27516334-27516615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 187
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chrX:34401799-34402095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
44, 217
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chrX:37836389-37836674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 207
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chrX:7508941-7509239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chrX:28878358-28878067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chrX:42470135-42469815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chrX:32623384-32623716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 99
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chrX:33639773-33640123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 136
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chrX:38006966-38006618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chrX:41884616-41884252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
51, 313
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chrX:31294742-31294362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
146, 15
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chrX:32420020-32420426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 204
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chrX:34554530-34554942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 201
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chrX:34532330-34532731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chrX:27509218-27508800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chrX:44054603-44055027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 188
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chrX:6488388-6488792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
54, 179
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chrX:29545078-29544657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 190
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chrX:31250191-31250620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 181
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chrX:1465989-1466394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chrX:13912882-13913307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 114
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chrX:34565094-34565518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chrX:8925507-8925915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 202
               

               
Conread position:
               
3-416
               

               
Cow position:
               
chrX:14884160-14883718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 314
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chrX:48247034-48246849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 116
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chrX:34990843-34991091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
4-381
               

               
Cow position:
               
chrX:1055587-1055178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
4-406
               

               
Cow position:
               
chrX:126595-126986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chrX:27705391-27705820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
6, 172
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chrX:33000706-33001131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 207
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chrX:37781315-37780879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 315
               

               
Conread position:
               
5-411
               

               
Cow position:
               
chrX:12437436-12437050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 72
               

               
Conread position:
               
5-411
               

               
Cow position:
               
chrX:16996310-16996727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 125
               

               
Conread position:
               
8-170
               

               
Cow position:
               
chrX:7513321-7513494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chrX:4768557-4768943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
8-397
               

               
Cow position:
               
chrX:11939120-11938734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 150
               

               
Conread position:
               
8-407
               

               
Cow position:
               
chrX:4269260-4268841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 181
               

               
Conread position:
               
8-408
               

               
Cow position:
               
chrX:29602026-29601598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 307
               

               
Conread position:
               
8-409
               

               
Cow position:
               
chrX:36355929-36356335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
8-411
               

               
Cow position:
               
chrX:35224106-35224510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chrX:37540932-37541182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chrX:10412181-10411878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chrX:1505522-1505720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chrX:3489074-3488789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 248
               

               
Conread position:
               
12-334
               

               
Cow position:
               
chrX:43730404-43730076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 175
               

               
Conread position:
               
12-398
               

               
Cow position:
               
chrX:31436293-31436689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 170
               

               
Conread position:
               
12-409
               

               
Cow position:
               
chrX:11633489-11633913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 306
               

               
Conread position:
               
13-277
               

               
Cow position:
               
chrX:48014267-48014527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
13-321
               

               
Cow position:
               
chrX:7161883-7162191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
14-295
               

               
Cow position:
               
chrX:47362799-47362513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 121
               

               
Conread position:
               
15-185
               

               
Cow position:
               
chrX:31256681-31256864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
16-402
               

               
Cow position:
               
chrX:161236-161624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
18-402
               

               
Cow position:
               
chrX:4996425-4996813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
22-267
               

               
Cow position:
               
chrX:13785537-13785281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
24-312
               

               
Cow position:
               
chrX:38066616-38066329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
27-281
               

               
Cow position:
               
chrX:40481034-40480776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
29-411
               

               
Cow position:
               
chrX:34376783-34377172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
30-412
               

               
Cow position:
               
chrX:30421090-30420733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
32-266
               

               
Cow position:
               
chrX:19003142-19003374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
34-334
               

               
Cow position:
               
chrX:22387400-22387102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
34-411
               

               
Cow position:
               
chrX:10959553-10959183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 149
               

               
Conread position:
               
38-385
               

               
Cow position:
               
chrX:41068564-41068927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
39-397
               

               
Cow position:
               
chrX:45875239-45875609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 133
               

               
Conread position:
               
48-407
               

               
Cow position:
               
chrX:24331638-24332006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
51-293
               

               
Cow position:
               
chrX:29680401-29680153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
9, 150
               

               
Conread position:
               
51-330
               

               
Cow position:
               
chrX:36067878-36068162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
51-382
               

               
Cow position:
               
chrX:27946197-27945849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 5
               

               
Conread position:
               
51-404
               

               
Cow position:
               
chrX:44396880-44397237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chrX:6407407-6407779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
51-412
               

               
Cow position:
               
chrX:3579803-3580179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
52-402
               

               
Cow position:
               
chrX:41870933-41871281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
53-411
               

               
Cow position:
               
chrX:21642615-21642248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
60, 56
               

               
Conread position:
               
55-394
               

               
Cow position:
               
chrX:30840421-30840757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
176, 49
               

               
Conread position:
               
56-334
               

               
Cow position:
               
chrX:42235667-42235377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
20, 150
               

               
Conread position:
               
57-177
               

               
Cow position:
               
chrX:37955700-37955822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
57-291
               

               
Cow position:
               
chrX:19273856-19273600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chrX:45845966-45846241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
92, 173
               

               
Conread position:
               
57-394
               

               
Cow position:
               
chrX:27227990-27228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 179
               

               
Conread position:
               
57-395
               

               
Cow position:
               
chrX:32820895-32821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 134
               

               
Conread position:
               
57-409
               

               
Cow position:
               
chrX:45976787-45977155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
44, 248
               

               
Conread position:
               
57-410
               

               
Cow position:
               
chrX:1503205-1503539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
88, 123
               

               
Conread position:
               
59-278
               

               
Cow position:
               
chrX:45403961-45403732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
59-278
               

               
Cow position:
               
chrX:46722869-46722641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 118
               

               
Conread position:
               
59-281
               

               
Cow position:
               
chrX:47481668-47481892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 138
               

               
Conread position:
               
59-334
               

               
Cow position:
               
chrX:40269356-40269642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 245
               

               
Conread position:
               
59-377
               

               
Cow position:
               
chrX:14275864-14275549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
59-402
               

               
Cow position:
               
chrX:27206667-27207018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
69, 158
               

               
Conread position:
               
59-407
               

               
Cow position:
               
chrX:18204594-18204237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
59-409
               

               
Cow position:
               
chrX:38218580-38218944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
60-182
               

               
Cow position:
               
chrX:11806143-11806017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-225
               

               
Cow position:
               
chrX:38439348-38439518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
60-247
               

               
Cow position:
               
chrX:32215067-32215261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 129
               

               
Conread position:
               
60-258
               

               
Cow position:
               
chrX:36961509-36961707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
60-264
               

               
Cow position:
               
chrX:11589718-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
60-272
               

               
Cow position:
               
chrX:20709945-20710161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 106
               

               
Conread position:
               
60-278
               

               
Cow position:
               
chrX:2467753-2467977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 134
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chrX:21566272-21566515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chrX:30543417-30543176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
60-320
               

               
Cow position:
               
chrX:616392-616125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 142
               

               
Conread position:
               
60-326
               

               
Cow position:
               
chrX:33493648-33493916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
60-326
               

               
Cow position:
               
chrX:37986103-37986365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 75
               

               
Conread position:
               
60-327
               

               
Cow position:
               
chrX:14599403-14599673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
89, 106
               

               
Conread position:
               
60-329
               

               
Cow position:
               
chrX:9365805-9365533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
89, 106
               

               
Conread position:
               
60-334
               

               
Cow position:
               
chrX:31311899-31312177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 239
               

               
Conread position:
               
60-344
               

               
Cow position:
               
chrX:42873262-42873544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
60-368
               

               
Cow position:
               
chrX:31252288-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
60-375
               

               
Cow position:
               
chrX:5919366-5919689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
193, 77
               

               
Conread position:
               
60-377
               

               
Cow position:
               
chrX:21672425-21672761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 137
               

               
Conread position:
               
60-388
               

               
Cow position:
               
chrX:35542765-35543094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
60-390
               

               
Cow position:
               
chrX:12309515-12309173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
60-392
               

               
Cow position:
               
chrX:35273226-35273586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
60-394
               

               
Cow position:
               
chrX:8730953-8731310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 253
               

               
Conread position:
               
60-394
               

               
Cow position:
               
chrX:10831623-10831265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 243
               

               
Conread position:
               
60-396
               

               
Cow position:
               
chrX:25035514-25035163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
60-397
               

               
Cow position:
               
chrX:26492876-26493226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
60-401
               

               
Cow position:
               
chrX:8869532-8869181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chrX:8917266-8917619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chrX:17541837-17542165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
189, 16
               

               
Conread position:
               
60-402
               

               
Cow position:
               
chrX:36393477-36393117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
60-403
               

               
Cow position:
               
chrX:1616174-1615833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
89, 240
               

               
Conread position:
               
60-404
               

               
Cow position:
               
chrX:31260756-31260399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
60-404
               

               
Cow position:
               
chrX:35383146-35382816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chrX:4398999-4399347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 75
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chrX:15007280-15006930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 138
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chrX:25207973-25207632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
60-407
               

               
Cow position:
               
chrX:45502022-45502364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 59
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chrX:35822212-35822561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 198
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chrX:41027027-41027390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chrX:45598730-45598377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chrX:34313903-34314253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chrX:21986422-21986068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 168
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chrX:24365957-24365589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chrX:30133455-30133091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chrX:40035570-40035209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chrX:40685461-40685096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 242
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chrX:45110529-45110884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chrX:7351169-7351535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
60-412
               

               
Cow position:
               
chrX:27145493-27145833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 95
               

               
Conread position:
               
60-418
               

               
Cow position:
               
chrX:10252310-10251965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 12
               

               
Conread position:
               
60-419
               

               
Cow position:
               
chrX:20584193-20584557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 248
               

               
Conread position:
               
61-285
               

               
Cow position:
               
chrX:5872188-5872417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
46, 139
               

               
Conread position:
               
61-286
               

               
Cow position:
               
chrX:27685118-27685350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
61-291
               

               
Cow position:
               
chrX:39126204-39126432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
61-293
               

               
Cow position:
               
chrX:7710672-7710431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
61-334
               

               
Cow position:
               
chrX:13382200-13382473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 123
               

               
Conread position:
               
61-398
               

               
Cow position:
               
chrX:41526650-41526314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
61-410
               

               
Cow position:
               
chrX:34792436-34792091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chrX:11085185-11084915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
62-407
               

               
Cow position:
               
chrX:36061027-36061388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 252
               

               
Conread position:
               
62-408
               

               
Cow position:
               
chrX:47484396-47484028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chrX:22921188-22921554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
64-411
               

               
Cow position:
               
chrX:39415493-39415157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
64-418
               

               
Cow position:
               
chrX:34505173-34504815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
65-394
               

               
Cow position:
               
chrX:15596916-15597244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
65-402
               

               
Cow position:
               
chrX:20168434-20168779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
65-411
               

               
Cow position:
               
chrX:48010473-48010838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chrX:24288047-24287740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
67-411
               

               
Cow position:
               
chrX:18111267-18111612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
68-411
               

               
Cow position:
               
chrX:40320283-40320639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
70-409
               

               
Cow position:
               
chrX:26881688-26881331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 229
               

               
Conread position:
               
71-415
               

               
Cow position:
               
chrX:4403195-4403554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
72-286
               

               
Cow position:
               
chrX:5679684-5679471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
76-407
               

               
Cow position:
               
chrX:35885844-35885503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
76-410
               

               
Cow position:
               
chrX:42927933-42927598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
77-407
               

               
Cow position:
               
chrX:33539052-33539380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
77-412
               

               
Cow position:
               
chrX:9651138-9650793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 223
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chrX:29194123-29194362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
79-407
               

               
Cow position:
               
chrX:17949601-17949263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
82-407
               

               
Cow position:
               
chrX:27261080-27261419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
82-411
               

               
Cow position:
               
chrX:29229902-29230240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
83-402
               

               
Cow position:
               
chrX:13923764-13924085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
89-283
               

               
Cow position:
               
chrX:16348671-16348473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
89-391
               

               
Cow position:
               
chrX:46291037-46291354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
60, 77
               

               
Conread position:
               
91-318
               

               
Cow position:
               
chrX:31515070-31515306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 213
               

               
Conread position:
               
91-402
               

               
Cow position:
               
chrX:10516157-10516478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 46
               

               
Conread position:
               
92-378
               

               
Cow position:
               
chrX:40283027-40283323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
92-411
               

               
Cow position:
               
chrX:14955863-14955534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
94-402
               

               
Cow position:
               
chrX:34837150-34836848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
94-412
               

               
Cow position:
               
chrX:12095870-12095537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
95-408
               

               
Cow position:
               
chrX:38560462-38560780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
96-418
               

               
Cow position:
               
chrX:47345240-47345570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chrX:33654933-33654610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
99-376
               

               
Cow position:
               
chrX:918818-918528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
99-411
               

               
Cow position:
               
chrX:4296910-4296591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
99-414
               

               
Cow position:
               
chrX:29050156-29050481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 197
               

               
Conread position:
               
101-397
               

               
Cow position:
               
chrX:31489431-31489740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 202
               

               
Conread position:
               
101-411
               

               
Cow position:
               
chrX:48071072-48071395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
103-411
               

               
Cow position:
               
chrX:35590844-35590525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 91
               

               
Conread position:
               
104-334
               

               
Cow position:
               
chrX:23562549-23562780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
104-402
               

               
Cow position:
               
chrX:40680525-40680839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
47, 202
               

               
Conread position:
               
105-321
               

               
Cow position:
               
chrX:18273143-18272922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
45, 194
               

               
Conread position:
               
107-413
               

               
Cow position:
               
chrX:4153118-4152809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 206
               

               
Conread position:
               
110-402
               

               
Cow position:
               
chrX:22115397-22115090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
110-409
               

               
Cow position:
               
chrX:36866091-36866404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
111-334
               

               
Cow position:
               
chrX:5135604-5135372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 194
               

               
Conread position:
               
111-394
               

               
Cow position:
               
chrX:41192629-41192905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
112-368
               

               
Cow position:
               
chrX:4515606-4515878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
115-408
               

               
Cow position:
               
chrX:19469575-19469285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 28
               

               
Conread position:
               
117-411
               

               
Cow position:
               
chrX:1088209-1087915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
121-410
               

               
Cow position:
               
chrX:42893854-42894154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
124-312
               

               
Cow position:
               
chrX:12082391-12082198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
21, 176
               

               
Conread position:
               
127-398
               

               
Cow position:
               
chrX:11326159-11325888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
75, 174
               

               
Conread position:
               
127-408
               

               
Cow position:
               
chrX:47650263-47650003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chrX:20957190-20957469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 13
               

               
Conread position:
               
130-326
               

               
Cow position:
               
chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
6, 169
               

               
Conread position:
               
130-408
               

               
Cow position:
               
chrX:39352720-39353002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
132-402
               

               
Cow position:
               
chrX:16984574-16984859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
133-411
               

               
Cow position:
               
chrX:24749034-24749320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
51, 58
               

               
Conread position:
               
137-414
               

               
Cow position:
               
chrX:28940198-28940480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
141-334
               

               
Cow position:
               
chrX:40532089-40531895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chrX:27306410-27306669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
104, 153
               

               
Conread position:
               
144-410
               

               
Cow position:
               
chrX:35985776-35986047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
144-411
               

               
Cow position:
               
chrX:2523720-2523467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
144-411
               

               
Cow position:
               
chrX:22393028-22392755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 152
               

               
Conread position:
               
145-408
               

               
Cow position:
               
chrX:19394511-19394785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
111, 45
               

               
Conread position:
               
148-281
               

               
Cow position:
               
chrX:44095220-44095356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chrX:4289401-4289664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
35, 156
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chrX:6599822-6599541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 149
               

               
Conread position:
               
149-400
               

               
Cow position:
               
chrX:47061357-47061608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
152-410
               

               
Cow position:
               
chrX:17956661-17956921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
171-411
               

               
Cow position:
               
chrX:3806668-3806910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
175-404
               

               
Cow position:
               
chrX:45383057-45382834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
180-402
               

               
Cow position:
               
chrX:12972673-12972902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
182-393
               

               
Cow position:
               
chrX:46070178-46069970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
183-409
               

               
Cow position:
               
chrX:2935952-2936184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
71, 118
               

               
Conread position:
               
185-402
               

               
Cow position:
               
chrX:42479830-42480051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
185-408
               

               
Cow position:
               
chrX:27668959-27668732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 5
               

               
Conread position:
               
186-408
               

               
Cow position:
               
chrX:23088854-23089065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
186-415
               

               
Cow position:
               
chrX:32208824-32208590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
190-398
               

               
Cow position:
               
chrX:39290361-39290575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
190-402
               

               
Cow position:
               
chrX:4466969-4467175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
190-412
               

               
Cow position:
               
chrX:17292957-17293190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
196-372
               

               
Cow position:
               
chrX:41862372-41862554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
201-402
               

               
Cow position:
               
chrX:16836273-16836070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
201-411
               

               
Cow position:
               
chrX:29467765-29467549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
202-408
               

               
Cow position:
               
chrX:4559753-4559964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
202-410
               

               
Cow position:
               
chrX:38301823-38302047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
202-411
               

               
Cow position:
               
chrX:1122529-1122314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
112, 47
               

               
Conread position:
               
202-412
               

               
Cow position:
               
chrX:32910118-32910331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
208-398
               

               
Cow position:
               
chrX:31479991-31480186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
208-402
               

               
Cow position:
               
chrX:5026276-5026475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
208-410
               

               
Cow position:
               
chrX:31744985-31744783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
208-411
               

               
Cow position:
               
chrX:20340623-20340425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
208-411
               

               
Cow position:
               
chrX:27075031-27074818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chrX:51871-51669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chrX:32866900-32867103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
214-402
               

               
Cow position:
               
chrX:12212699-12212888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
214-408
               

               
Cow position:
               
chrX:20583692-20583890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
214-410
               

               
Cow position:
               
chrX:23359085-23358885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
98, 80
               

               
Conread position:
               
218-411
               

               
Cow position:
               
chrX:8326934-8327138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
220-411
               

               
Cow position:
               
chrX:5487900-5487711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
180, 21
               

               
Conread position:
               
223-417
               

               
Cow position:
               
chrX:34991399-34991597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
225-402
               

               
Cow position:
               
chrX:41858845-41858660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
225-416
               

               
Cow position:
               
chrX:6480559-6480357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
230-408
               

               
Cow position:
               
chrX:23471824-23471638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
231-420
               

               
Cow position:
               
chrX:25232045-25232225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 13
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chrX:11529392-11529567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
234-411
               

               
Cow position:
               
chrX:23497641-23497464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
234-413
               

               
Cow position:
               
chrX:27170789-27170969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
244-408
               

               
Cow position:
               
chrX:41215381-41215553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
246-410
               

               
Cow position:
               
chrX:40556398-40556231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
249-409
               

               
Cow position:
               
chrX:46068695-46068533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
249-411
               

               
Cow position:
               
chrX:39642558-39642395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
249-412
               

               
Cow position:
               
chrX:12814-12977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
249-419
               

               
Cow position:
               
chrX:4750268-4750097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
250-408
               

               
Cow position:
               
chrX:14135743-14135905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
251-411
               

               
Cow position:
               
chrX:17525801-17525644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
251-411
               

               
Cow position:
               
chrX:42875278-42875442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
255-398
               

               
Cow position:
               
chrX:25420401-25420544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
260-410
               

               
Cow position:
               
chrX:35029851-35029704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
264-409
               

               
Cow position:
               
chrX:31279845-31279696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 34
               
Show alignments to all cow chromosomes.