Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047B13.3 |
| Conread position: | 1-181 |
| Cow position: | chr14:3156303-3156484 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-222 |
| Cow position: | chr14:25784001-25784223 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 1-223 |
| Cow position: | chr14:25836200-25836423 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 1-224 |
| Cow position: | chr14:447574-447798 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 1-224 |
| Cow position: | chr14:3155478-3155702 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-224 |
| Cow position: | chr14:25784337-25784561 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 1-224 |
| Cow position: | chr14:25836620-25836844 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 145 |
| Conread position: | 1-224 |
| Cow position: | chr14:25860597-25860816 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 190 |
| Conread position: | 1-224 |
| Cow position: | chr14:25877648-25877872 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 63 |
| Conread position: | 1-224 |
| Cow position: | chr14:25895603-25895827 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 1-227 |
| Cow position: | chr14:25783497-25783724 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-249 |
| Cow position: | chr14:680544-680793 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-262 |
| Cow position: | chr14:434131-434393 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 1-262 |
| Cow position: | chr14:3127869-3127607 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 1-263 |
| Cow position: | chr14:3127533-3127270 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-266 |
| Cow position: | chr14:680880-681146 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 1-266 |
| Cow position: | chr14:25783917-25784183 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-266 |
| Cow position: | chr14:25784253-25784519 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-269 |
| Cow position: | chr14:447742-448011 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-269 |
| Cow position: | chr14:447826-448095 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 1-269 |
| Cow position: | chr14:680376-680645 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-269 |
| Cow position: | chr14:680712-680981 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 1-269 |
| Cow position: | chr14:3080525-3080256 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-269 |
| Cow position: | chr14:3080609-3080340 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-269 |
| Cow position: | chr14:3080693-3080424 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-269 |
| Cow position: | chr14:3127953-3127684 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 1-269 |
| Cow position: | chr14:25836872-25837141 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-277 |
| Cow position: | chr14:3080021-3079745 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 268 |
| Conread position: | 1-277 |
| Cow position: | chr14:3156135-3156411 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 268 |
| Conread position: | 1-278 |
| Cow position: | chr14:25876724-25877001 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 2-205 |
| Cow position: | chr14:25896192-25896396 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 2-269 |
| Cow position: | chr14:3080356-3080088 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-254 |
| Cow position: | chr14:3127699-3127447 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-262 |
| Cow position: | chr14:25860263-25860523 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-269 |
| Cow position: | chr14:3127615-3127348 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 133 |
| Conread position: | 4-273 |
| Cow position: | chr14:25836959-25837229 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 7-224 |
| Cow position: | chr14:681054-681272 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 7-224 |
| Cow position: | chr14:3061582-3061364 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 7-249 |
| Cow position: | chr14:434053-434296 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-262 |
| Cow position: | chr14:3060910-3060654 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 7-262 |
| Cow position: | chr14:3080099-3079843 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-262 |
| Cow position: | chr14:3080435-3080179 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 7-262 |
| Cow position: | chr14:25859679-25859935 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 7-262 |
| Cow position: | chr14:25876562-25876818 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 7-266 |
| Cow position: | chr14:680970-681230 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-266 |
| Cow position: | chr14:25860183-25860443 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 7-269 |
| Cow position: | chr14:680466-680729 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-269 |
| Cow position: | chr14:680634-680897 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-269 |
| Cow position: | chr14:25877486-25877749 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 155 |
| Conread position: | 8-223 |
| Cow position: | chr14:25894938-25895154 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 156 |
| Conread position: | 8-262 |
| Cow position: | chr14:3127778-3127523 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 130 |
| Conread position: | 8-269 |
| Cow position: | chr14:3080854-3080592 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 9-254 |
| Cow position: | chr14:3155975-3156221 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 133 |
| Conread position: | 9-263 |
| Cow position: | chr14:447666-447921 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 9-266 |
| Cow position: | chr14:3061664-3061406 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 9-266 |
| Cow position: | chr14:3080181-3079923 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 9-269 |
| Cow position: | chr14:680804-681065 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 9-296 |
| Cow position: | chr14:3061328-3061039 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 63, 263 |
| Conread position: | 13-262 |
| Cow position: | chr14:3155406-3155656 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 18-261 |
| Cow position: | chr14:3155900-3156144 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 18-269 |
| Cow position: | chr14:3080760-3080508 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 180 |
| Conread position: | 18-269 |
| Cow position: | chr14:25860110-25860362 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 92-261 |
| Cow position: | chr14:25783505-25783674 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.