Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047B13.3 |
| Conread position: | 1-223 |
| Cow position: | chr25:326564-326787 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-223 |
| Cow position: | chr25:33156986-33156764 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 196 |
| Conread position: | 1-224 |
| Cow position: | chr25:23420450-23420674 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 71 |
| Conread position: | 1-224 |
| Cow position: | chr25:34769637-34769413 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-242 |
| Cow position: | chr25:36801610-36801852 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 1-249 |
| Cow position: | chr25:34447425-34447674 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 230 |
| Conread position: | 1-255 |
| Cow position: | chr25:34447341-34447596 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 1-262 |
| Cow position: | chr25:33127953-33128215 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 134 |
| Conread position: | 1-262 |
| Cow position: | chr25:33157490-33157228 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 64, 235 |
| Conread position: | 1-262 |
| Cow position: | chr25:33298966-33299228 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 56, 239 |
| Conread position: | 1-262 |
| Cow position: | chr25:36801034-36801296 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 56, 235 |
| Conread position: | 1-265 |
| Cow position: | chr25:34447005-34447270 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-266 |
| Cow position: | chr25:33157070-33156804 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-266 |
| Cow position: | chr25:33157322-33157056 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 1-266 |
| Cow position: | chr25:33157406-33157140 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-266 |
| Cow position: | chr25:34769721-34769455 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 135 |
| Conread position: | 1-266 |
| Cow position: | chr25:34769973-34769707 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-266 |
| Cow position: | chr25:34770057-34769791 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 134 |
| Conread position: | 1-269 |
| Cow position: | chr25:33145081-33145350 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-277 |
| Cow position: | chr25:33157154-33156878 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 268 |
| Conread position: | 2-266 |
| Cow position: | chr25:33157237-33156972 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 3-269 |
| Cow position: | chr25:34769803-34769536 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 142 |
| Conread position: | 4-267 |
| Cow position: | chr25:33145168-33145432 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 7-262 |
| Cow position: | chr25:33127791-33128047 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 7-262 |
| Cow position: | chr25:33127875-33128131 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 8-216 |
| Cow position: | chr25:34769546-34769337 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 9-269 |
| Cow position: | chr25:34769881-34769620 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 10-251 |
| Cow position: | chr25:34770132-34769890 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 32-251 |
| Cow position: | chr25:34446952-34447172 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 35-266 |
| Cow position: | chr25:23420316-23420548 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 71-262 |
| Cow position: | chr25:34763549-34763740 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-269 |
| Cow position: | chr25:33157476-33157305 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-768 |
| Cow position: | chr25:33122183-33122554 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 467-738 |
| Cow position: | chr25:339443-339717 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 496-738 |
| Cow position: | chr25:4663679-4663438 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 505-764 |
| Cow position: | chr25:321848-322107 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 505-765 |
| Cow position: | chr25:34467680-34467941 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 248, 0 |
| Conread position: | 507-788 |
| Cow position: | chr25:33142812-33143093 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 511-710 |
| Cow position: | chr25:361392-361589 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 511-751 |
| Cow position: | chr25:3673396-3673636 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 511-755 |
| Cow position: | chr25:421945-422189 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 197, 182 |
| Conread position: | 517-761 |
| Cow position: | chr25:34751274-34751518 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-766 |
| Cow position: | chr25:3639852-3639609 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 523-773 |
| Cow position: | chr25:34745087-34744837 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 528-788 |
| Cow position: | chr25:22223945-22224205 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 239, 248 |
Show alignments to all cow chromosomes.