Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 39-270 |
| Cow position: | chr10:55069167-55069400 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 54-256 |
| Cow position: | chr10:54504577-54504783 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 54-267 |
| Cow position: | chr10:61509971-61509756 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 123 |
| Conread position: | 55-258 |
| Cow position: | chr10:37068439-37068239 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 55-270 |
| Cow position: | chr10:37508173-37507957 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 56-227 |
| Cow position: | chr10:52695751-52695577 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 56-329 |
| Cow position: | chr10:14947237-14947508 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 98, 5 |
| Conread position: | 58-237 |
| Cow position: | chr10:56828341-56828159 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 59-222 |
| Cow position: | chr10:21422179-21422017 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 59-252 |
| Cow position: | chr10:10148626-10148826 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 59-255 |
| Cow position: | chr10:24756389-24756588 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 92, 169 |
| Conread position: | 59-263 |
| Cow position: | chr10:10120170-10120374 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 59-265 |
| Cow position: | chr10:23346325-23346118 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 96, 66 |
| Conread position: | 61-235 |
| Cow position: | chr10:37295693-37295512 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 61-248 |
| Cow position: | chr10:2857027-2857219 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 60 |
| Conread position: | 61-251 |
| Cow position: | chr10:60697644-60697454 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 61-254 |
| Cow position: | chr10:17149859-17150049 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 110 |
| Conread position: | 61-254 |
| Cow position: | chr10:49862449-49862641 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 61-255 |
| Cow position: | chr10:23056098-23055910 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 172, 91 |
| Conread position: | 61-255 |
| Cow position: | chr10:43460073-43459875 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 61-255 |
| Cow position: | chr10:46327670-46327869 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 61-255 |
| Cow position: | chr10:59417256-59417059 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 119 |
| Conread position: | 61-262 |
| Cow position: | chr10:49634046-49634252 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 129 |
| Conread position: | 61-263 |
| Cow position: | chr10:49146495-49146693 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-264 |
| Cow position: | chr10:1978692-1978482 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 61-264 |
| Cow position: | chr10:38995208-38995424 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 61-266 |
| Cow position: | chr10:34646467-34646266 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 61-266 |
| Cow position: | chr10:40998835-40999049 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 61-268 |
| Cow position: | chr10:45371036-45371251 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 61-269 |
| Cow position: | chr10:59571881-59572085 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-270 |
| Cow position: | chr10:6384510-6384719 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 166, 91 |
| Conread position: | 61-270 |
| Cow position: | chr10:24971347-24971137 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 117 |
| Conread position: | 61-271 |
| Cow position: | chr10:35731545-35731332 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-271 |
| Cow position: | chr10:65904225-65904431 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 61-274 |
| Cow position: | chr10:38205731-38205522 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 114 |
| Conread position: | 61-294 |
| Cow position: | chr10:28840935-28841170 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 58, 122 |
| Conread position: | 61-318 |
| Cow position: | chr10:37426154-37425890 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 62-219 |
| Cow position: | chr10:46886137-46886292 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 62-255 |
| Cow position: | chr10:11047224-11047026 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 154 |
| Conread position: | 63-237 |
| Cow position: | chr10:58149188-58149009 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 63-272 |
| Cow position: | chr10:48407119-48407327 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 144 |
| Conread position: | 63-276 |
| Cow position: | chr10:60446713-60446930 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 65-263 |
| Cow position: | chr10:5784271-5784065 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 69-307 |
| Cow position: | chr10:14188623-14188388 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 67 |
| Conread position: | 72-270 |
| Cow position: | chr10:58651196-58650999 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 80-236 |
| Cow position: | chr10:9576050-9575889 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-252 |
| Cow position: | chr10:25822244-25822078 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 80-275 |
| Cow position: | chr10:27136690-27136488 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 168 |
| Conread position: | 81-237 |
| Cow position: | chr10:22390596-22390757 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 81-266 |
| Cow position: | chr10:18751476-18751286 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 81-266 |
| Cow position: | chr10:57095201-57095014 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 81-270 |
| Cow position: | chr10:26103138-26102958 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 81-270 |
| Cow position: | chr10:39124132-39124327 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 170 |
| Conread position: | 84-273 |
| Cow position: | chr10:10634221-10634405 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 86-237 |
| Cow position: | chr10:54848782-54848938 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 88-255 |
| Cow position: | chr10:58044122-58043948 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 90-265 |
| Cow position: | chr10:62353467-62353646 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 96-267 |
| Cow position: | chr10:47429840-47430016 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 96-269 |
| Cow position: | chr10:15817779-15817606 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 96-270 |
| Cow position: | chr10:61922129-61921948 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 116-324 |
| Cow position: | chr10:60240185-60239976 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 128 |
Show alignments to all cow chromosomes.