Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 7-262 |
| Cow position: | chr11:15016993-15017252 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 23-270 |
| Cow position: | chr11:31227909-31228154 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 38-262 |
| Cow position: | chr11:55494643-55494859 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 189, 23 |
| Conread position: | 54-271 |
| Cow position: | chr11:63866680-63866457 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 15 |
| Conread position: | 55-262 |
| Cow position: | chr11:30964325-30964537 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 56-251 |
| Cow position: | chr11:17676391-17676192 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 58-236 |
| Cow position: | chr11:27248476-27248656 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 58-251 |
| Cow position: | chr11:35580243-35580444 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 59-256 |
| Cow position: | chr11:13061252-13061066 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 170, 93 |
| Conread position: | 59-274 |
| Cow position: | chr11:75874771-75874565 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 169, 93 |
| Conread position: | 60-255 |
| Cow position: | chr11:20238661-20238863 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 61-225 |
| Cow position: | chr11:39499342-39499511 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-237 |
| Cow position: | chr11:77319400-77319581 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-237 |
| Cow position: | chr11:80564279-80564466 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-251 |
| Cow position: | chr11:29960284-29960474 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-251 |
| Cow position: | chr11:67614936-67614742 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 106 |
| Conread position: | 61-255 |
| Cow position: | chr11:52380886-52380685 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 61-258 |
| Cow position: | chr11:62812964-62812762 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-262 |
| Cow position: | chr11:62789116-62789321 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 119 |
| Conread position: | 61-262 |
| Cow position: | chr11:63165661-63165456 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 133 |
| Conread position: | 61-265 |
| Cow position: | chr11:3175659-3175868 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 169 |
| Conread position: | 61-268 |
| Cow position: | chr11:48085904-48086118 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 61-269 |
| Cow position: | chr11:30830628-30830420 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 61-270 |
| Cow position: | chr11:18915012-18915213 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 167, 91 |
| Conread position: | 61-270 |
| Cow position: | chr11:44031997-44032208 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 91, 117 |
| Conread position: | 61-270 |
| Cow position: | chr11:48296019-48296226 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-270 |
| Cow position: | chr11:62620362-62620578 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-271 |
| Cow position: | chr11:18851894-18852105 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 61-272 |
| Cow position: | chr11:39060616-39060401 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 61-279 |
| Cow position: | chr11:25119945-25119725 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 8 |
| Conread position: | 61-279 |
| Cow position: | chr11:30895018-30894791 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 62-264 |
| Cow position: | chr11:3896712-3896502 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 62-264 |
| Cow position: | chr11:69977957-69978163 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 90, 166 |
| Conread position: | 62-266 |
| Cow position: | chr11:30986628-30986834 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 63-255 |
| Cow position: | chr11:46922898-46922700 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 63-272 |
| Cow position: | chr11:48315409-48315195 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 63-301 |
| Cow position: | chr11:62663244-62663016 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 76-270 |
| Cow position: | chr11:56114943-56115140 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 80-264 |
| Cow position: | chr11:52297216-52297028 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 107 |
| Conread position: | 80-268 |
| Cow position: | chr11:80008063-80007861 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 80-309 |
| Cow position: | chr11:63999087-63998851 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 206 |
| Conread position: | 81-222 |
| Cow position: | chr11:11469642-11469500 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 83-256 |
| Cow position: | chr11:259164-258990 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 83-271 |
| Cow position: | chr11:42066871-42067067 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 84-276 |
| Cow position: | chr11:49210813-49210610 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 177 |
| Conread position: | 85-315 |
| Cow position: | chr11:36182704-36182940 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 127 |
| Conread position: | 88-255 |
| Cow position: | chr11:74839623-74839790 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 91 |
| Conread position: | 88-255 |
| Cow position: | chr11:83043350-83043180 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 88-266 |
| Cow position: | chr11:4411856-4411679 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 89-275 |
| Cow position: | chr11:42206435-42206624 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 89-286 |
| Cow position: | chr11:25721981-25721788 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 90-266 |
| Cow position: | chr11:15591460-15591282 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 82 |
| Conread position: | 90-270 |
| Cow position: | chr11:4621416-4621234 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 90-302 |
| Cow position: | chr11:71814721-71814937 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 96-268 |
| Cow position: | chr11:80923303-80923123 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 97-258 |
| Cow position: | chr11:63483964-63484130 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 120-271 |
| Cow position: | chr11:32587079-32586923 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.