Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 23-254 |
| Cow position: | chr13:11565858-11565623 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 49-264 |
| Cow position: | chr13:11103203-11103436 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 54-272 |
| Cow position: | chr13:33854696-33854914 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 98, 6 |
| Conread position: | 54-304 |
| Cow position: | chr13:14927249-14926998 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 58-247 |
| Cow position: | chr13:971913-972106 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 41 |
| Conread position: | 58-251 |
| Cow position: | chr13:34261219-34261022 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 58-254 |
| Cow position: | chr13:8450315-8450117 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 58-255 |
| Cow position: | chr13:41806757-41806559 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 94, 154 |
| Conread position: | 59-237 |
| Cow position: | chr13:35557127-35557310 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 59-251 |
| Cow position: | chr13:19883053-19883247 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 59-264 |
| Cow position: | chr13:15288941-15289143 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 59-264 |
| Cow position: | chr13:55674224-55674434 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 200 |
| Conread position: | 59-266 |
| Cow position: | chr13:19393275-19393064 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 92, 45 |
| Conread position: | 61-220 |
| Cow position: | chr13:20666407-20666567 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-244 |
| Cow position: | chr13:20217416-20217604 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-252 |
| Cow position: | chr13:20784572-20784380 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 111 |
| Conread position: | 61-254 |
| Cow position: | chr13:21170510-21170312 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 117 |
| Conread position: | 61-254 |
| Cow position: | chr13:42200601-42200404 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 123 |
| Conread position: | 61-255 |
| Cow position: | chr13:23667235-23667040 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 150 |
| Conread position: | 61-255 |
| Cow position: | chr13:25817508-25817312 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 61-255 |
| Cow position: | chr13:38329598-38329400 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 86, 120 |
| Conread position: | 61-255 |
| Cow position: | chr13:53850806-53850603 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-256 |
| Cow position: | chr13:17821288-17821476 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-258 |
| Cow position: | chr13:36877042-36876845 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 117 |
| Conread position: | 61-262 |
| Cow position: | chr13:21235689-21235892 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 61-262 |
| Cow position: | chr13:43480039-43479835 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 61-264 |
| Cow position: | chr13:17089538-17089739 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 61-266 |
| Cow position: | chr13:18058268-18058477 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 61-266 |
| Cow position: | chr13:54389039-54389246 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 167 |
| Conread position: | 61-268 |
| Cow position: | chr13:49283798-49284010 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 61-269 |
| Cow position: | chr13:17114397-17114616 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 61-269 |
| Cow position: | chr13:54582854-54582643 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 61-270 |
| Cow position: | chr13:15194753-15194951 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-270 |
| Cow position: | chr13:19279076-19278863 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 61-270 |
| Cow position: | chr13:38283996-38284203 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 152 |
| Conread position: | 61-276 |
| Cow position: | chr13:21288103-21288328 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 91, 120 |
| Conread position: | 61-299 |
| Cow position: | chr13:52057539-52057295 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 155 |
| Conread position: | 61-313 |
| Cow position: | chr13:13320779-13320529 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 170 |
| Conread position: | 62-252 |
| Cow position: | chr13:18197627-18197821 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 186 |
| Conread position: | 63-251 |
| Cow position: | chr13:52913853-52913663 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 112 |
| Conread position: | 63-258 |
| Cow position: | chr13:58763638-58763829 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 88, 113 |
| Conread position: | 63-266 |
| Cow position: | chr13:37554894-37555099 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 63-271 |
| Cow position: | chr13:55765198-55765411 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 65-264 |
| Cow position: | chr13:21171592-21171796 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 69-255 |
| Cow position: | chr13:6113552-6113749 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 79-269 |
| Cow position: | chr13:21242120-21242305 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 80-235 |
| Cow position: | chr13:10711452-10711611 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-252 |
| Cow position: | chr13:13088992-13088818 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 80-258 |
| Cow position: | chr13:37614233-37614418 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-278 |
| Cow position: | chr13:6189637-6189841 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 81-241 |
| Cow position: | chr13:19022233-19022061 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 81-265 |
| Cow position: | chr13:20534858-20534673 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 81-270 |
| Cow position: | chr13:17021764-17021955 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 84-269 |
| Cow position: | chr13:15083623-15083428 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 85-265 |
| Cow position: | chr13:23399724-23399542 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 163 |
| Conread position: | 88-263 |
| Cow position: | chr13:14063566-14063745 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 101 |
| Conread position: | 88-281 |
| Cow position: | chr13:37405666-37405469 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 89-265 |
| Cow position: | chr13:52477693-52477872 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 90-273 |
| Cow position: | chr13:14645004-14644818 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 88 |
| Conread position: | 90-291 |
| Cow position: | chr13:53619957-53619743 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 91-271 |
| Cow position: | chr13:23823082-23823261 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 96-263 |
| Cow position: | chr13:22345327-22345500 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 96-266 |
| Cow position: | chr13:6951526-6951353 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 96-266 |
| Cow position: | chr13:28081669-28081487 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 98-264 |
| Cow position: | chr13:23478847-23478674 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 98-272 |
| Cow position: | chr13:43342513-43342333 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.