Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 25-255 |
| Cow position: | chr16:48398282-48398054 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 129, 8 |
| Conread position: | 46-301 |
| Cow position: | chr16:19402774-19402515 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 130 |
| Conread position: | 54-306 |
| Cow position: | chr16:46433330-46433070 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 208 |
| Conread position: | 55-271 |
| Cow position: | chr16:26649631-26649415 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 97, 121 |
| Conread position: | 56-256 |
| Cow position: | chr16:42078848-42078644 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 57-254 |
| Cow position: | chr16:48956798-48957002 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 58-247 |
| Cow position: | chr16:16025437-16025640 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 58-266 |
| Cow position: | chr16:56231828-56232030 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 171, 91 |
| Conread position: | 58-276 |
| Cow position: | chr16:14376783-14377003 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 59-250 |
| Cow position: | chr16:33704809-33705001 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 59-255 |
| Cow position: | chr16:55233686-55233882 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 59-276 |
| Cow position: | chr16:45294546-45294770 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 59-292 |
| Cow position: | chr16:1582924-1582687 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 117 |
| Conread position: | 60-237 |
| Cow position: | chr16:34205061-34204879 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 60-309 |
| Cow position: | chr16:11660458-11660212 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 169, 85 |
| Conread position: | 61-237 |
| Cow position: | chr16:33646019-33646201 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-241 |
| Cow position: | chr16:31484658-31484476 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 61-244 |
| Cow position: | chr16:31561759-31561947 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-249 |
| Cow position: | chr16:51500936-51501126 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 61-251 |
| Cow position: | chr16:51598608-51598413 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 61-255 |
| Cow position: | chr16:7723705-7723903 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 61-256 |
| Cow position: | chr16:15945252-15945047 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-258 |
| Cow position: | chr16:12324459-12324661 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-258 |
| Cow position: | chr16:39474148-39473951 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 89, 109 |
| Conread position: | 61-258 |
| Cow position: | chr16:54579171-54579372 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 61-263 |
| Cow position: | chr16:16597561-16597770 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 201 |
| Conread position: | 61-264 |
| Cow position: | chr16:30305808-30305605 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-264 |
| Cow position: | chr16:48095761-48095556 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 91 |
| Conread position: | 61-266 |
| Cow position: | chr16:11584401-11584192 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 134 |
| Conread position: | 61-266 |
| Cow position: | chr16:19052639-19052847 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 151 |
| Conread position: | 61-266 |
| Cow position: | chr16:52834884-52834686 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-268 |
| Cow position: | chr16:13689670-13689878 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 61-270 |
| Cow position: | chr16:19478761-19478546 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 168 |
| Conread position: | 61-270 |
| Cow position: | chr16:53451709-53451924 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 128 |
| Conread position: | 61-271 |
| Cow position: | chr16:11134977-11134766 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 93, 195 |
| Conread position: | 61-277 |
| Cow position: | chr16:27728264-27728475 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 131 |
| Conread position: | 62-298 |
| Cow position: | chr16:31149383-31149623 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 92, 56 |
| Conread position: | 63-222 |
| Cow position: | chr16:41578232-41578396 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 119 |
| Conread position: | 69-256 |
| Cow position: | chr16:4857087-4856895 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 69-266 |
| Cow position: | chr16:48613465-48613260 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 72-237 |
| Cow position: | chr16:51143814-51143985 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 80-269 |
| Cow position: | chr16:9097046-9097246 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-270 |
| Cow position: | chr16:4616660-4616465 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 183 |
| Conread position: | 81-256 |
| Cow position: | chr16:32970056-32969877 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 81-274 |
| Cow position: | chr16:8738089-8738293 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 81-304 |
| Cow position: | chr16:13290538-13290744 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 148, 71 |
| Conread position: | 87-252 |
| Cow position: | chr16:41696038-41696207 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 89-307 |
| Cow position: | chr16:31011359-31011582 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 90-255 |
| Cow position: | chr16:48130362-48130192 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 91-254 |
| Cow position: | chr16:49734112-49733942 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 91-272 |
| Cow position: | chr16:5396783-5396597 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 173 |
| Conread position: | 96-264 |
| Cow position: | chr16:12111927-12111755 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 98-298 |
| Cow position: | chr16:3938970-3938767 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 161 |
Show alignments to all cow chromosomes.