Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 9-264 |
| Cow position: | chr17:12959104-12959349 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 143, 33 |
| Conread position: | 14-265 |
| Cow position: | chr17:32333092-32332837 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 32-270 |
| Cow position: | chr17:24895090-24895336 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 45-309 |
| Cow position: | chr17:21718968-21718697 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 107, 16 |
| Conread position: | 54-255 |
| Cow position: | chr17:25128316-25128110 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 55-261 |
| Cow position: | chr17:40276778-40276992 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 56-247 |
| Cow position: | chr17:5372487-5372296 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 58-251 |
| Cow position: | chr17:33933704-33933508 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 113 |
| Conread position: | 58-255 |
| Cow position: | chr17:908781-908984 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 58-270 |
| Cow position: | chr17:12325724-12325508 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 92, 121 |
| Conread position: | 59-237 |
| Cow position: | chr17:31037335-31037151 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 59-264 |
| Cow position: | chr17:24824284-24824499 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 177 |
| Conread position: | 59-270 |
| Cow position: | chr17:7959222-7959437 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 74 |
| Conread position: | 59-277 |
| Cow position: | chr17:32138382-32138146 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 60-262 |
| Cow position: | chr17:9824712-9824919 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 113 |
| Conread position: | 60-270 |
| Cow position: | chr17:29995393-29995178 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 194 |
| Conread position: | 61-234 |
| Cow position: | chr17:11912459-11912282 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 61-240 |
| Cow position: | chr17:12536421-12536245 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 168, 90 |
| Conread position: | 61-248 |
| Cow position: | chr17:21114910-21114718 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-254 |
| Cow position: | chr17:18934304-18934499 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 61-255 |
| Cow position: | chr17:1634448-1634250 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 187 |
| Conread position: | 61-255 |
| Cow position: | chr17:25473236-25473037 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-258 |
| Cow position: | chr17:32471737-32471543 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 61-263 |
| Cow position: | chr17:6423808-6424006 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 168, 98 |
| Conread position: | 61-263 |
| Cow position: | chr17:11664541-11664326 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 207 |
| Conread position: | 61-265 |
| Cow position: | chr17:26818414-26818218 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 168, 71 |
| Conread position: | 61-266 |
| Cow position: | chr17:17044288-17044079 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 91, 122 |
| Conread position: | 61-266 |
| Cow position: | chr17:24587668-24587879 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-268 |
| Cow position: | chr17:21039601-21039814 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-269 |
| Cow position: | chr17:32419072-32418859 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 61-269 |
| Cow position: | chr17:32989520-32989730 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 163 |
| Conread position: | 61-269 |
| Cow position: | chr17:32993580-32993369 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 91, 163 |
| Conread position: | 61-270 |
| Cow position: | chr17:3467796-3468006 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 183 |
| Conread position: | 61-270 |
| Cow position: | chr17:33793210-33793412 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-280 |
| Cow position: | chr17:17034993-17035209 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 91, 135 |
| Conread position: | 61-292 |
| Cow position: | chr17:15102850-15102610 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 91, 218 |
| Conread position: | 61-334 |
| Cow position: | chr17:36864674-36864948 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 62-237 |
| Cow position: | chr17:946402-946582 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 62-237 |
| Cow position: | chr17:15728518-15728694 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 105, 90 |
| Conread position: | 62-255 |
| Cow position: | chr17:40638992-40639191 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 62-267 |
| Cow position: | chr17:25612135-25612343 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 117 |
| Conread position: | 64-238 |
| Cow position: | chr17:5027413-5027237 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 64-267 |
| Cow position: | chr17:10016326-10016533 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 65-255 |
| Cow position: | chr17:22051542-22051346 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 66-271 |
| Cow position: | chr17:35043875-35043675 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 80-283 |
| Cow position: | chr17:30728567-30728778 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 116 |
| Conread position: | 81-231 |
| Cow position: | chr17:25348432-25348586 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 81-273 |
| Cow position: | chr17:21466199-21465996 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 86-269 |
| Cow position: | chr17:9260543-9260352 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 88-272 |
| Cow position: | chr17:34790993-34790801 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 88-280 |
| Cow position: | chr17:8663575-8663776 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 196 |
| Conread position: | 89-296 |
| Cow position: | chr17:30977092-30977302 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 96-270 |
| Cow position: | chr17:17782134-17782311 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 133 |
| Conread position: | 100-270 |
| Cow position: | chr17:27606600-27606771 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 87 |
Show alignments to all cow chromosomes.