Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 54-256 |
| Cow position: | chr18:45558110-45558315 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 54-263 |
| Cow position: | chr18:45903931-45903718 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 56-268 |
| Cow position: | chr18:42479620-42479398 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 59-263 |
| Cow position: | chr18:35535178-35534972 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 169 |
| Conread position: | 59-266 |
| Cow position: | chr18:23630636-23630434 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 170, 36 |
| Conread position: | 59-268 |
| Cow position: | chr18:25598264-25598050 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 59-291 |
| Cow position: | chr18:6881385-6881153 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 60-281 |
| Cow position: | chr18:28322626-28322845 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 126 |
| Conread position: | 61-236 |
| Cow position: | chr18:15613890-15613713 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 113 |
| Conread position: | 61-237 |
| Cow position: | chr18:9365889-9366074 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 61-252 |
| Cow position: | chr18:6470065-6470259 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 123 |
| Conread position: | 61-252 |
| Cow position: | chr18:51643395-51643202 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 116 |
| Conread position: | 61-254 |
| Cow position: | chr18:8171115-8170922 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 166, 91 |
| Conread position: | 61-255 |
| Cow position: | chr18:4152584-4152382 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 61-255 |
| Cow position: | chr18:9974358-9974160 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-255 |
| Cow position: | chr18:51383427-51383228 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-256 |
| Cow position: | chr18:2773422-2773216 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-256 |
| Cow position: | chr18:2776925-2776719 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-257 |
| Cow position: | chr18:2146609-2146423 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 110, 91 |
| Conread position: | 61-260 |
| Cow position: | chr18:38937791-38937995 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 61-263 |
| Cow position: | chr18:10977240-10977031 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 61-264 |
| Cow position: | chr18:9010678-9010882 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 131 |
| Conread position: | 61-264 |
| Cow position: | chr18:52649377-52649160 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-266 |
| Cow position: | chr18:50632472-50632264 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 131 |
| Conread position: | 61-267 |
| Cow position: | chr18:49038432-49038636 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 115 |
| Conread position: | 61-268 |
| Cow position: | chr18:20641526-20641317 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 114 |
| Conread position: | 61-269 |
| Cow position: | chr18:49100398-49100201 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-270 |
| Cow position: | chr18:20462725-20462520 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 61-270 |
| Cow position: | chr18:41702807-41703018 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-272 |
| Cow position: | chr18:43796985-43796775 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 61-273 |
| Cow position: | chr18:11790895-11791107 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 61-286 |
| Cow position: | chr18:48407709-48407932 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 91, 135 |
| Conread position: | 61-290 |
| Cow position: | chr18:15517201-15516978 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 61-299 |
| Cow position: | chr18:1571265-1571026 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 62-255 |
| Cow position: | chr18:34444762-34444567 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 62-266 |
| Cow position: | chr18:22569095-22568887 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 123 |
| Conread position: | 63-255 |
| Cow position: | chr18:49603071-49602872 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 69-231 |
| Cow position: | chr18:43125064-43125222 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 80-241 |
| Cow position: | chr18:33158931-33159099 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-268 |
| Cow position: | chr18:22790099-22789910 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 92 |
| Conread position: | 80-319 |
| Cow position: | chr18:43400724-43400493 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 82-269 |
| Cow position: | chr18:18844008-18844195 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 84-270 |
| Cow position: | chr18:12273651-12273833 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 94 |
| Conread position: | 88-234 |
| Cow position: | chr18:10904847-10904996 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 88-258 |
| Cow position: | chr18:49440838-49441016 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 88-318 |
| Cow position: | chr18:9596180-9596405 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 91-255 |
| Cow position: | chr18:17974630-17974794 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 138, 77 |
| Conread position: | 96-250 |
| Cow position: | chr18:10576116-10576268 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 131, 56 |
| Conread position: | 96-255 |
| Cow position: | chr18:50004700-50004536 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 96-268 |
| Cow position: | chr18:47802086-47801916 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 96-272 |
| Cow position: | chr18:44262635-44262811 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 135, 65 |
| Conread position: | 98-264 |
| Cow position: | chr18:50276236-50276063 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 99-263 |
| Cow position: | chr18:17007472-17007307 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 113 |
Show alignments to all cow chromosomes.