Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 54-264 |
| Cow position: | chr21:42135556-42135343 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 98, 122 |
| Conread position: | 54-266 |
| Cow position: | chr21:41590504-41590288 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 98, 7 |
| Conread position: | 55-263 |
| Cow position: | chr21:19868894-19868687 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 172, 97 |
| Conread position: | 58-251 |
| Cow position: | chr21:11182617-11182812 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 151 |
| Conread position: | 58-255 |
| Cow position: | chr21:8506482-8506280 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 58-255 |
| Cow position: | chr21:8509370-8509168 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 59-250 |
| Cow position: | chr21:22850986-22851177 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 168, 23 |
| Conread position: | 59-254 |
| Cow position: | chr21:21615847-21616042 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 113 |
| Conread position: | 59-266 |
| Cow position: | chr21:39393813-39394028 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 61-237 |
| Cow position: | chr21:41287726-41287547 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 115 |
| Conread position: | 61-248 |
| Cow position: | chr21:7825123-7824930 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 61-248 |
| Cow position: | chr21:24875419-24875612 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 61-249 |
| Cow position: | chr21:8349398-8349583 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 61-249 |
| Cow position: | chr21:17252911-17252716 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 61-250 |
| Cow position: | chr21:29069260-29069061 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 61-251 |
| Cow position: | chr21:44214194-44214374 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 168, 36 |
| Conread position: | 61-252 |
| Cow position: | chr21:20163775-20163972 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 61-254 |
| Cow position: | chr21:641654-641850 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 115 |
| Conread position: | 61-255 |
| Cow position: | chr21:802250-802056 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 91, 120 |
| Conread position: | 61-255 |
| Cow position: | chr21:25012149-25012345 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 61-257 |
| Cow position: | chr21:15012506-15012700 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 124 |
| Conread position: | 61-259 |
| Cow position: | chr21:40820786-40820582 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 89, 199 |
| Conread position: | 61-266 |
| Cow position: | chr21:7169755-7169964 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 202 |
| Conread position: | 61-266 |
| Cow position: | chr21:12104432-12104631 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 61-266 |
| Cow position: | chr21:46451887-46451694 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-267 |
| Cow position: | chr21:16498586-16498794 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-269 |
| Cow position: | chr21:20174385-20174593 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 61-289 |
| Cow position: | chr21:34654141-34654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 91, 8 |
| Conread position: | 63-258 |
| Cow position: | chr21:32559296-32559100 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 139, 89 |
| Conread position: | 63-267 |
| Cow position: | chr21:71656-71864 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 66-266 |
| Cow position: | chr21:27810462-27810666 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 69-265 |
| Cow position: | chr21:18568564-18568357 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 80-254 |
| Cow position: | chr21:643410-643586 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 148 |
| Conread position: | 80-264 |
| Cow position: | chr21:14126363-14126543 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 98 |
| Conread position: | 80-272 |
| Cow position: | chr21:82153-82341 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 96 |
| Conread position: | 81-252 |
| Cow position: | chr21:11644879-11644703 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 168 |
| Conread position: | 83-268 |
| Cow position: | chr21:6291835-6292026 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 183 |
| Conread position: | 84-237 |
| Cow position: | chr21:8351204-8351045 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 84-255 |
| Cow position: | chr21:6713433-6713257 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 85-258 |
| Cow position: | chr21:31462653-31462828 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 86 |
| Conread position: | 86-280 |
| Cow position: | chr21:44732951-44732753 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 88-264 |
| Cow position: | chr21:40930381-40930201 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 96-268 |
| Cow position: | chr21:45376050-45376226 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 162 |
| Conread position: | 96-270 |
| Cow position: | chr21:742379-742556 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 110-271 |
| Cow position: | chr21:12339739-12339899 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 77 |
Show alignments to all cow chromosomes.