Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 26-266 |
| Cow position: | chr28:5139016-5138780 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 203, 14 |
| Conread position: | 54-256 |
| Cow position: | chr28:9109217-9109419 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 98, 117 |
| Conread position: | 54-268 |
| Cow position: | chr28:29850814-29850602 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 162, 98 |
| Conread position: | 54-271 |
| Cow position: | chr28:17949112-17948893 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 98, 130 |
| Conread position: | 55-254 |
| Cow position: | chr28:10977843-10978045 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 159 |
| Conread position: | 55-268 |
| Cow position: | chr28:11426539-11426327 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 120 |
| Conread position: | 58-255 |
| Cow position: | chr28:4182006-4182209 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 94, 140 |
| Conread position: | 59-255 |
| Cow position: | chr28:4013090-4013291 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 59-276 |
| Cow position: | chr28:4884250-4884026 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 207 |
| Conread position: | 59-315 |
| Cow position: | chr28:8787546-8787810 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 93, 62 |
| Conread position: | 60-235 |
| Cow position: | chr28:16346524-16346350 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 61-251 |
| Cow position: | chr28:30902134-30902325 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 91, 116 |
| Conread position: | 61-257 |
| Cow position: | chr28:16879581-16879780 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 91, 116 |
| Conread position: | 61-261 |
| Cow position: | chr28:3410979-3410777 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 114 |
| Conread position: | 61-265 |
| Cow position: | chr28:3445473-3445260 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 61-269 |
| Cow position: | chr28:5204203-5204408 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 137 |
| Conread position: | 61-270 |
| Cow position: | chr28:5254882-5255094 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 61-271 |
| Cow position: | chr28:7132079-7131868 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 61-271 |
| Cow position: | chr28:21868465-21868682 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-272 |
| Cow position: | chr28:20124792-20125008 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 61-275 |
| Cow position: | chr28:5205279-5205479 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-280 |
| Cow position: | chr28:7619142-7618927 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 91, 124 |
| Conread position: | 61-280 |
| Cow position: | chr28:9636449-9636225 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 199 |
| Conread position: | 61-291 |
| Cow position: | chr28:8396343-8396564 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 121 |
| Conread position: | 61-305 |
| Cow position: | chr28:4016539-4016783 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 93, 112 |
| Conread position: | 62-258 |
| Cow position: | chr28:29416707-29416514 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 161, 35 |
| Conread position: | 62-269 |
| Cow position: | chr28:7350663-7350873 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 90, 161 |
| Conread position: | 63-258 |
| Cow position: | chr28:13474310-13474510 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 104 |
| Conread position: | 63-307 |
| Cow position: | chr28:32014794-32015049 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 90, 225 |
| Conread position: | 65-270 |
| Cow position: | chr28:21844969-21845172 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 67-236 |
| Cow position: | chr28:2777544-2777719 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 80-255 |
| Cow position: | chr28:4070996-4071166 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 80-273 |
| Cow position: | chr28:10203146-10203338 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 81-268 |
| Cow position: | chr28:777703-777899 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 87-252 |
| Cow position: | chr28:5805701-5805867 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 87-301 |
| Cow position: | chr28:11305599-11305385 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 88-256 |
| Cow position: | chr28:3492749-3492578 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 88-263 |
| Cow position: | chr28:8936185-8936366 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 88-266 |
| Cow position: | chr28:3678397-3678578 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 99 |
| Conread position: | 88-266 |
| Cow position: | chr28:29989075-29988889 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 88-268 |
| Cow position: | chr28:24966421-24966607 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 88-287 |
| Cow position: | chr28:17739857-17740064 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 178 |
| Conread position: | 96-270 |
| Cow position: | chr28:9705693-9705880 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 97-264 |
| Cow position: | chr28:11828918-11828742 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 97-278 |
| Cow position: | chr28:4866529-4866345 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 80 |
Show alignments to all cow chromosomes.