Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 23-227 |
| Cow position: | chr3:74601057-74601262 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 129, 7 |
| Conread position: | 27-274 |
| Cow position: | chr3:44932463-44932711 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 125, 13 |
| Conread position: | 37-270 |
| Cow position: | chr3:75107730-75107965 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 7 |
| Conread position: | 53-251 |
| Cow position: | chr3:52845526-52845730 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 54-330 |
| Cow position: | chr3:60264744-60264472 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 97, 131 |
| Conread position: | 56-263 |
| Cow position: | chr3:68004727-68004522 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 56-264 |
| Cow position: | chr3:9641542-9641745 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 5 |
| Conread position: | 58-255 |
| Cow position: | chr3:3883839-3883641 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 58-255 |
| Cow position: | chr3:48072906-48072707 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 170 |
| Conread position: | 58-256 |
| Cow position: | chr3:71703454-71703638 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 58-266 |
| Cow position: | chr3:75080739-75080942 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 67 |
| Conread position: | 59-236 |
| Cow position: | chr3:74079659-74079478 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 47 |
| Conread position: | 59-249 |
| Cow position: | chr3:10958263-10958071 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 169 |
| Conread position: | 59-263 |
| Cow position: | chr3:53221989-53222199 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 59-286 |
| Cow position: | chr3:50768656-50768888 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 216 |
| Conread position: | 60-258 |
| Cow position: | chr3:74234164-74234363 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 166 |
| Conread position: | 61-222 |
| Cow position: | chr3:19788851-19788686 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-237 |
| Cow position: | chr3:74533328-74533495 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-241 |
| Cow position: | chr3:26970792-26970976 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 153 |
| Conread position: | 61-255 |
| Cow position: | chr3:45881877-45882078 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-262 |
| Cow position: | chr3:55177767-55177565 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 61-264 |
| Cow position: | chr3:67407387-67407179 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 61-265 |
| Cow position: | chr3:31115291-31115088 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-265 |
| Cow position: | chr3:54506686-54506896 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-266 |
| Cow position: | chr3:15159010-15159219 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 171 |
| Conread position: | 61-266 |
| Cow position: | chr3:59299553-59299763 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 61-269 |
| Cow position: | chr3:22165436-22165225 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 61-269 |
| Cow position: | chr3:27274510-27274720 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 61-270 |
| Cow position: | chr3:22924396-22924190 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 116 |
| Conread position: | 61-270 |
| Cow position: | chr3:59604825-59605036 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-270 |
| Cow position: | chr3:61224765-61224555 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 61-270 |
| Cow position: | chr3:64196805-64197021 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-270 |
| Cow position: | chr3:80564945-80565159 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 61-273 |
| Cow position: | chr3:76922684-76922476 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 90 |
| Conread position: | 61-275 |
| Cow position: | chr3:75966802-75966581 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 34 |
| Conread position: | 61-278 |
| Cow position: | chr3:49363088-49363309 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 61-278 |
| Cow position: | chr3:52608161-52608378 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 177 |
| Conread position: | 61-280 |
| Cow position: | chr3:15950934-15950717 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 61-283 |
| Cow position: | chr3:23105383-23105161 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 106 |
| Conread position: | 61-304 |
| Cow position: | chr3:15160499-15160740 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 79-268 |
| Cow position: | chr3:23818488-23818679 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 75, 113 |
| Conread position: | 79-273 |
| Cow position: | chr3:2016432-2016628 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 99 |
| Conread position: | 80-255 |
| Cow position: | chr3:56943928-56943751 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 80-263 |
| Cow position: | chr3:23132171-23131982 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 72, 180 |
| Conread position: | 81-265 |
| Cow position: | chr3:57704335-57704521 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 84-252 |
| Cow position: | chr3:71474402-71474231 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 84-255 |
| Cow position: | chr3:68708011-68707843 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 64 |
| Conread position: | 85-286 |
| Cow position: | chr3:65058701-65058912 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 88 |
| Conread position: | 87-254 |
| Cow position: | chr3:48363077-48363247 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 88-236 |
| Cow position: | chr3:5737757-5737906 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 88-248 |
| Cow position: | chr3:20021275-20021440 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 88-258 |
| Cow position: | chr3:24774659-24774824 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 88-265 |
| Cow position: | chr3:26977540-26977726 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-267 |
| Cow position: | chr3:76269898-76270079 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 88-271 |
| Cow position: | chr3:74050696-74050511 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 88-330 |
| Cow position: | chr3:83455145-83454899 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 89-261 |
| Cow position: | chr3:43896053-43895877 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 96-258 |
| Cow position: | chr3:6182213-6182051 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 96-258 |
| Cow position: | chr3:23408344-23408182 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 96-270 |
| Cow position: | chr3:66885016-66884837 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 170 |
| Conread position: | 96-270 |
| Cow position: | chr3:82425065-82424886 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 151 |
| Conread position: | 97-253 |
| Cow position: | chr3:2636964-2637122 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 99-265 |
| Cow position: | chr3:8523137-8522965 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 43 |
Show alignments to all cow chromosomes.