Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 9-251 |
| Cow position: | chr4:26659249-26659491 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 46-255 |
| Cow position: | chr4:54785943-54785735 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 54-265 |
| Cow position: | chr4:38944267-38944052 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 29 |
| Conread position: | 55-265 |
| Cow position: | chr4:19431706-19431485 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 96, 156 |
| Conread position: | 55-266 |
| Cow position: | chr4:46404914-46404705 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 58-269 |
| Cow position: | chr4:19119010-19119228 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 58-275 |
| Cow position: | chr4:18099069-18098847 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 201 |
| Conread position: | 58-292 |
| Cow position: | chr4:18951966-18952214 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 59-255 |
| Cow position: | chr4:10558530-10558731 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 170 |
| Conread position: | 59-263 |
| Cow position: | chr4:561626-561834 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 59-264 |
| Cow position: | chr4:43916282-43916500 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 59-270 |
| Cow position: | chr4:85688-85904 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 118 |
| Conread position: | 59-294 |
| Cow position: | chr4:33838806-33838569 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 60-290 |
| Cow position: | chr4:38209980-38209746 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 198 |
| Conread position: | 61-206 |
| Cow position: | chr4:23600163-23600314 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-249 |
| Cow position: | chr4:41907586-41907393 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 61-251 |
| Cow position: | chr4:13693676-13693483 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 61-255 |
| Cow position: | chr4:13344534-13344731 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 61-255 |
| Cow position: | chr4:19333382-19333578 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 167 |
| Conread position: | 61-255 |
| Cow position: | chr4:42423809-42423608 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-266 |
| Cow position: | chr4:59002143-59001932 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 61-269 |
| Cow position: | chr4:20027107-20026894 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 118 |
| Conread position: | 61-270 |
| Cow position: | chr4:39007503-39007705 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-270 |
| Cow position: | chr4:69290747-69290532 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 206 |
| Conread position: | 61-271 |
| Cow position: | chr4:28772071-28771859 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 115 |
| Conread position: | 61-276 |
| Cow position: | chr4:4319156-4318937 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 98 |
| Conread position: | 61-288 |
| Cow position: | chr4:3421618-3421854 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 119 |
| Conread position: | 61-288 |
| Cow position: | chr4:60527176-60527407 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 152 |
| Conread position: | 61-301 |
| Cow position: | chr4:44854295-44854044 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-317 |
| Cow position: | chr4:62472075-62472326 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 89, 142 |
| Conread position: | 62-289 |
| Cow position: | chr4:37991589-37991817 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 63-243 |
| Cow position: | chr4:34653871-34653692 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 166, 120 |
| Conread position: | 63-249 |
| Cow position: | chr4:17186352-17186159 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 26 |
| Conread position: | 63-255 |
| Cow position: | chr4:67393089-67393290 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 63-266 |
| Cow position: | chr4:21065034-21065231 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 165, 86 |
| Conread position: | 63-270 |
| Cow position: | chr4:36290622-36290832 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 124 |
| Conread position: | 63-283 |
| Cow position: | chr4:40414630-40414404 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 110 |
| Conread position: | 63-301 |
| Cow position: | chr4:56410343-56410584 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 195 |
| Conread position: | 64-278 |
| Cow position: | chr4:61887635-61887858 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 203 |
| Conread position: | 69-281 |
| Cow position: | chr4:44773039-44772812 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 79-270 |
| Cow position: | chr4:3519435-3519629 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 80-252 |
| Cow position: | chr4:51083323-51083148 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 91 |
| Conread position: | 80-260 |
| Cow position: | chr4:33970882-33970705 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 84, 102 |
| Conread position: | 80-269 |
| Cow position: | chr4:4085096-4084902 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 179 |
| Conread position: | 80-271 |
| Cow position: | chr4:37915321-37915127 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 99 |
| Conread position: | 80-277 |
| Cow position: | chr4:19578400-19578601 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 132 |
| Conread position: | 81-267 |
| Cow position: | chr4:8182621-8182426 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 84-267 |
| Cow position: | chr4:48409250-48409081 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 66 |
| Conread position: | 88-285 |
| Cow position: | chr4:34919247-34919051 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 88-290 |
| Cow position: | chr4:10915813-10915606 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 127 |
| Conread position: | 90-252 |
| Cow position: | chr4:68590796-68590961 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 90-291 |
| Cow position: | chr4:56395537-56395748 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 96-237 |
| Cow position: | chr4:61524463-61524607 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 96-255 |
| Cow position: | chr4:28854244-28854081 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 96-269 |
| Cow position: | chr4:30943985-30944162 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 104-266 |
| Cow position: | chr4:62821017-62820850 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 112-266 |
| Cow position: | chr4:42608785-42608946 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.