Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 44-257 |
| Cow position: | chr5:22667082-22667302 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 47-251 |
| Cow position: | chr5:57497408-57497200 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 54-266 |
| Cow position: | chr5:16893749-16893538 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 173, 98 |
| Conread position: | 58-250 |
| Cow position: | chr5:69099746-69099944 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 58-255 |
| Cow position: | chr5:65941224-65941020 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 59-240 |
| Cow position: | chr5:38168921-38169107 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 59-255 |
| Cow position: | chr5:21617485-21617685 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 93, 113 |
| Conread position: | 59-262 |
| Cow position: | chr5:35190137-35190342 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 93, 117 |
| Conread position: | 59-270 |
| Cow position: | chr5:2240962-2240743 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 59-286 |
| Cow position: | chr5:30302922-30303148 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 170, 10 |
| Conread position: | 60-301 |
| Cow position: | chr5:1694060-1693818 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 120 |
| Conread position: | 61-237 |
| Cow position: | chr5:66551868-66551680 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 61-237 |
| Cow position: | chr5:69383284-69383463 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 90, 105 |
| Conread position: | 61-251 |
| Cow position: | chr5:29903494-29903317 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-252 |
| Cow position: | chr5:17104882-17105072 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-255 |
| Cow position: | chr5:20288234-20288029 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 89, 194 |
| Conread position: | 61-255 |
| Cow position: | chr5:59626942-59626742 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 61-258 |
| Cow position: | chr5:37842250-37842046 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-262 |
| Cow position: | chr5:26549111-26548905 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 61-263 |
| Cow position: | chr5:57935079-57934882 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 168, 98 |
| Conread position: | 61-264 |
| Cow position: | chr5:26147620-26147827 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 183 |
| Conread position: | 61-264 |
| Cow position: | chr5:57074302-57074098 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 167 |
| Conread position: | 61-265 |
| Cow position: | chr5:21828897-21829104 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 61-266 |
| Cow position: | chr5:34288221-34288013 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 61-266 |
| Cow position: | chr5:49474516-49474313 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 166, 91 |
| Conread position: | 61-267 |
| Cow position: | chr5:45845662-45845448 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 61-267 |
| Cow position: | chr5:56014760-56014965 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 168, 90 |
| Conread position: | 61-270 |
| Cow position: | chr5:26167450-26167661 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 184 |
| Conread position: | 61-270 |
| Cow position: | chr5:44446836-44446629 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 91, 116 |
| Conread position: | 61-270 |
| Cow position: | chr5:51289562-51289357 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 61-276 |
| Cow position: | chr5:12434572-12434786 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 166, 90 |
| Conread position: | 61-284 |
| Cow position: | chr5:50824621-50824841 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 168, 98 |
| Conread position: | 61-291 |
| Cow position: | chr5:49821457-49821698 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 229 |
| Conread position: | 61-306 |
| Cow position: | chr5:47601841-47602085 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 140 |
| Conread position: | 63-264 |
| Cow position: | chr5:11668154-11667944 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 131 |
| Conread position: | 63-271 |
| Cow position: | chr5:15991608-15991400 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 66-255 |
| Cow position: | chr5:30561966-30562158 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 121 |
| Conread position: | 70-258 |
| Cow position: | chr5:74643639-74643451 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 70-270 |
| Cow position: | chr5:19626613-19626817 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 177 |
| Conread position: | 80-270 |
| Cow position: | chr5:38833169-38833361 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 96 |
| Conread position: | 81-237 |
| Cow position: | chr5:45397622-45397777 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 81-257 |
| Cow position: | chr5:51298663-51298484 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 81-264 |
| Cow position: | chr5:30276739-30276924 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 71, 94 |
| Conread position: | 81-271 |
| Cow position: | chr5:56028492-56028302 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 71, 103 |
| Conread position: | 81-276 |
| Cow position: | chr5:3817638-3817435 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 125 |
| Conread position: | 83-307 |
| Cow position: | chr5:37253480-37253703 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 146, 175 |
| Conread position: | 83-310 |
| Cow position: | chr5:34918397-34918628 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 88-258 |
| Cow position: | chr5:60100526-60100696 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 88-258 |
| Cow position: | chr5:60153831-60154001 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 88-265 |
| Cow position: | chr5:49207271-49207091 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 173 |
| Conread position: | 88-266 |
| Cow position: | chr5:60207764-60207946 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 88-269 |
| Cow position: | chr5:21721414-21721231 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 88-288 |
| Cow position: | chr5:29599490-29599293 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 96-251 |
| Cow position: | chr5:46540992-46540834 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 96-266 |
| Cow position: | chr5:67339947-67340122 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 96-288 |
| Cow position: | chr5:12673414-12673217 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 180 |
| Conread position: | 97-254 |
| Cow position: | chr5:34787639-34787801 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 97-269 |
| Cow position: | chr5:6245598-6245421 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 112-265 |
| Cow position: | chr5:17537593-17537439 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 65 |
Show alignments to all cow chromosomes.