Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 1-267 |
| Cow position: | chr6:2547240-2547516 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 151, 40 |
| Conread position: | 54-254 |
| Cow position: | chr6:3936820-3937029 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 54-270 |
| Cow position: | chr6:21231560-21231768 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 178, 98 |
| Conread position: | 56-270 |
| Cow position: | chr6:42034810-42035028 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 58-237 |
| Cow position: | chr6:19264459-19264276 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 172 |
| Conread position: | 58-251 |
| Cow position: | chr6:46860127-46859932 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 130 |
| Conread position: | 58-256 |
| Cow position: | chr6:23938100-23938295 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 171, 94 |
| Conread position: | 58-271 |
| Cow position: | chr6:52478371-52478149 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 58-276 |
| Cow position: | chr6:13687772-13687556 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 74 |
| Conread position: | 58-300 |
| Cow position: | chr6:3351068-3351319 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 94, 142 |
| Conread position: | 59-249 |
| Cow position: | chr6:61109828-61110019 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 93, 62 |
| Conread position: | 60-291 |
| Cow position: | chr6:21470387-21470154 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 94, 124 |
| Conread position: | 61-235 |
| Cow position: | chr6:18118006-18117828 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 61-237 |
| Cow position: | chr6:45690567-45690393 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 61-250 |
| Cow position: | chr6:58725413-58725605 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 61-255 |
| Cow position: | chr6:143331-143135 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 61-255 |
| Cow position: | chr6:53024761-53024568 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 115 |
| Conread position: | 61-258 |
| Cow position: | chr6:10105936-10105738 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 167 |
| Conread position: | 61-263 |
| Cow position: | chr6:50504499-50504707 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 61-264 |
| Cow position: | chr6:60273968-60273755 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 61-265 |
| Cow position: | chr6:24468353-24468146 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 61-267 |
| Cow position: | chr6:53546078-53546284 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 61-267 |
| Cow position: | chr6:60144155-60143944 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-268 |
| Cow position: | chr6:23696043-23696250 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 165 |
| Conread position: | 61-269 |
| Cow position: | chr6:12761322-12761537 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 61-270 |
| Cow position: | chr6:16090946-16091157 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 112, 91 |
| Conread position: | 61-270 |
| Cow position: | chr6:36202864-36203081 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 61-270 |
| Cow position: | chr6:58459764-58459974 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 139 |
| Conread position: | 61-275 |
| Cow position: | chr6:32121950-32122156 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 171, 87 |
| Conread position: | 61-275 |
| Cow position: | chr6:60850743-60850959 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 90, 187 |
| Conread position: | 63-262 |
| Cow position: | chr6:67451326-67451122 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 167 |
| Conread position: | 63-264 |
| Cow position: | chr6:36537316-36537112 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 109 |
| Conread position: | 63-269 |
| Cow position: | chr6:26155193-26155402 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 181 |
| Conread position: | 66-265 |
| Cow position: | chr6:14914188-14913979 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 86, 148 |
| Conread position: | 66-331 |
| Cow position: | chr6:5330460-5330740 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 259 |
| Conread position: | 69-275 |
| Cow position: | chr6:46558108-46558319 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 80-265 |
| Cow position: | chr6:48097539-48097350 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 150 |
| Conread position: | 80-291 |
| Cow position: | chr6:34423397-34423180 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-336 |
| Cow position: | chr6:21004738-21005006 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 263 |
| Conread position: | 81-255 |
| Cow position: | chr6:32006392-32006213 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 88-255 |
| Cow position: | chr6:43540180-43540019 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 64 |
| Conread position: | 88-330 |
| Cow position: | chr6:50577590-50577840 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 92 |
| Conread position: | 91-269 |
| Cow position: | chr6:18447445-18447252 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 96-283 |
| Cow position: | chr6:7291393-7291581 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 99-272 |
| Cow position: | chr6:54406719-54406548 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 118-270 |
| Cow position: | chr6:62849025-62849179 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.