Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C10.3 |
| Conread position: | 43-255 |
| Cow position: | chr9:59897633-59897422 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 53-264 |
| Cow position: | chr9:25557006-25556800 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 174, 99 |
| Conread position: | 55-271 |
| Cow position: | chr9:41728290-41728069 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 58-295 |
| Cow position: | chr9:59013313-59013553 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 59-251 |
| Cow position: | chr9:21460126-21460323 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 59-256 |
| Cow position: | chr9:17840650-17840854 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 59-262 |
| Cow position: | chr9:43757569-43757364 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 59-271 |
| Cow position: | chr9:33584657-33584876 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 59-276 |
| Cow position: | chr9:23955952-23956171 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 101 |
| Conread position: | 60-237 |
| Cow position: | chr9:34958029-34958208 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 107 |
| Conread position: | 61-218 |
| Cow position: | chr9:43202360-43202199 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-227 |
| Cow position: | chr9:33119862-33120036 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-235 |
| Cow position: | chr9:29006583-29006405 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 61-235 |
| Cow position: | chr9:34707286-34707464 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 61-237 |
| Cow position: | chr9:17799652-17799479 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 61-237 |
| Cow position: | chr9:33823144-33822961 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-237 |
| Cow position: | chr9:43159779-43159599 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 61-250 |
| Cow position: | chr9:17872084-17872276 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 126 |
| Conread position: | 61-255 |
| Cow position: | chr9:26279143-26279347 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-255 |
| Cow position: | chr9:36628144-36627948 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 114 |
| Conread position: | 61-255 |
| Cow position: | chr9:37199153-37198953 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-257 |
| Cow position: | chr9:13169637-13169841 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 113 |
| Conread position: | 61-258 |
| Cow position: | chr9:4241432-4241230 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 121 |
| Conread position: | 61-258 |
| Cow position: | chr9:12773716-12773517 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-258 |
| Cow position: | chr9:61303026-61302826 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 89, 123 |
| Conread position: | 61-264 |
| Cow position: | chr9:9552116-9551910 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 93, 143 |
| Conread position: | 61-266 |
| Cow position: | chr9:39011443-39011651 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 91, 169 |
| Conread position: | 61-269 |
| Cow position: | chr9:34286825-34286610 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-269 |
| Cow position: | chr9:42586530-42586736 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 61-270 |
| Cow position: | chr9:41785236-41785033 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 114 |
| Conread position: | 61-272 |
| Cow position: | chr9:20091073-20090872 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 61-273 |
| Cow position: | chr9:28747494-28747711 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 106 |
| Conread position: | 61-281 |
| Cow position: | chr9:53762722-53762496 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 62-248 |
| Cow position: | chr9:26394325-26394515 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 62-264 |
| Cow position: | chr9:19718315-19718517 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 63-278 |
| Cow position: | chr9:55256528-55256746 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 118 |
| Conread position: | 66-270 |
| Cow position: | chr9:36458020-36457807 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 69-237 |
| Cow position: | chr9:52998362-52998534 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 70-284 |
| Cow position: | chr9:32052293-32052076 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 189 |
| Conread position: | 80-251 |
| Cow position: | chr9:24887213-24887035 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-258 |
| Cow position: | chr9:52518819-52518998 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 80-272 |
| Cow position: | chr9:45141593-45141787 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 72, 107 |
| Conread position: | 81-293 |
| Cow position: | chr9:6192453-6192670 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 85-264 |
| Cow position: | chr9:26388210-26388032 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 144, 83 |
| Conread position: | 88-227 |
| Cow position: | chr9:44261507-44261645 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 88-269 |
| Cow position: | chr9:11098453-11098639 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 88-304 |
| Cow position: | chr9:33101116-33101326 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 84, 64 |
| Conread position: | 89-304 |
| Cow position: | chr9:34024697-34024479 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 174 |
| Conread position: | 90-264 |
| Cow position: | chr9:11380649-11380828 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 90-266 |
| Cow position: | chr9:44918283-44918463 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 96-255 |
| Cow position: | chr9:11299689-11299848 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 133, 56 |
| Conread position: | 96-269 |
| Cow position: | chr9:8628926-8629104 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 96-270 |
| Cow position: | chr9:12269021-12268846 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 96-271 |
| Cow position: | chr9:5186873-5187050 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 97-295 |
| Cow position: | chr9:53323794-53324001 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 98-271 |
| Cow position: | chr9:28773128-28772954 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 99-274 |
| Cow position: | chr9:1917967-1917787 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 102-270 |
| Cow position: | chr9:6237508-6237680 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 85 |
Show alignments to all cow chromosomes.