Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-231 |
| Cow position: | chr1:40420099-40419867 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 56 |
| Conread position: | 2-153 |
| Cow position: | chr1:92550756-92550598 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 2-173 |
| Cow position: | chr1:100132234-100132417 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 2-196 |
| Cow position: | chr1:49728240-49728440 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 183 |
| Conread position: | 2-196 |
| Cow position: | chr1:57757555-57757740 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 2-206 |
| Cow position: | chr1:40222443-40222250 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-208 |
| Cow position: | chr1:41092809-41092599 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 2-215 |
| Cow position: | chr1:71555447-71555222 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 190 |
| Conread position: | 2-225 |
| Cow position: | chr1:65155416-65155188 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 183 |
| Conread position: | 2-228 |
| Cow position: | chr1:85409506-85409276 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 2-233 |
| Cow position: | chr1:23510426-23510199 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 2-233 |
| Cow position: | chr1:37739428-37739199 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 125, 73 |
| Conread position: | 2-233 |
| Cow position: | chr1:64098922-64098685 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 2-233 |
| Cow position: | chr1:64745388-64745155 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 127, 47 |
| Conread position: | 2-234 |
| Cow position: | chr1:3750259-3750490 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 2-234 |
| Cow position: | chr1:28512284-28512061 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-235 |
| Cow position: | chr1:25885737-25885505 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 2-235 |
| Cow position: | chr1:31232974-31232756 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 196, 12 |
| Conread position: | 2-235 |
| Cow position: | chr1:37432740-37432979 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 2-235 |
| Cow position: | chr1:63134286-63134511 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 123, 32 |
| Conread position: | 2-235 |
| Cow position: | chr1:88017474-88017234 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 2-235 |
| Cow position: | chr1:101883974-101884206 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 2-236 |
| Cow position: | chr1:11831678-11831905 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 196, 44 |
| Conread position: | 2-239 |
| Cow position: | chr1:6985476-6985249 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 195, 64 |
| Conread position: | 2-241 |
| Cow position: | chr1:93832347-93832581 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 2-248 |
| Cow position: | chr1:85594-85845 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 2-250 |
| Cow position: | chr1:77755360-77755097 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 191 |
| Conread position: | 2-255 |
| Cow position: | chr1:34892929-34893190 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 2-260 |
| Cow position: | chr1:52207353-52207611 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 2-268 |
| Cow position: | chr1:62041744-62041999 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 2-273 |
| Cow position: | chr1:18223505-18223239 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 3-181 |
| Cow position: | chr1:74713823-74713999 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 3-196 |
| Cow position: | chr1:22072010-22072201 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 3-235 |
| Cow position: | chr1:82572880-82572647 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 4-220 |
| Cow position: | chr1:61242081-61242301 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 5-232 |
| Cow position: | chr1:45979020-45979236 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 5-252 |
| Cow position: | chr1:6866048-6865795 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 62, 180 |
| Conread position: | 6-138 |
| Cow position: | chr1:87914591-87914458 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 6-235 |
| Cow position: | chr1:46268667-46268448 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 10-240 |
| Cow position: | chr1:79349264-79349030 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 118, 64 |
| Conread position: | 13-234 |
| Cow position: | chr1:39244179-39243951 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 13-234 |
| Cow position: | chr1:69290514-69290736 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 14-210 |
| Cow position: | chr1:64479588-64479392 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 15-234 |
| Cow position: | chr1:9511905-9511694 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 111, 21 |
| Conread position: | 15-247 |
| Cow position: | chr1:81371100-81370869 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 66, 168 |
| Conread position: | 20-233 |
| Cow position: | chr1:100388080-100387864 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 21-196 |
| Cow position: | chr1:8726331-8726150 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 21-232 |
| Cow position: | chr1:28408132-28407924 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 21-233 |
| Cow position: | chr1:3746483-3746696 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 30-247 |
| Cow position: | chr1:80329567-80329347 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 159 |
| Conread position: | 32-196 |
| Cow position: | chr1:68332809-68332640 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 144 |
| Conread position: | 33-248 |
| Cow position: | chr1:59910969-59911191 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 40, 155 |
| Conread position: | 37-233 |
| Cow position: | chr1:22495944-22496142 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 148 |
| Conread position: | 38-248 |
| Cow position: | chr1:54365221-54365007 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 37, 149 |
| Conread position: | 41-242 |
| Cow position: | chr1:2296975-2297180 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 41-243 |
| Cow position: | chr1:27546182-27546383 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 43 |
| Conread position: | 42-248 |
| Cow position: | chr1:11878785-11878573 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 41, 143 |
| Conread position: | 49-236 |
| Cow position: | chr1:14560144-14559955 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 58-230 |
| Cow position: | chr1:71272441-71272612 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 60-248 |
| Cow position: | chr1:47371366-47371552 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 138, 64 |
| Conread position: | 65-176 |
| Cow position: | chr1:71086152-71086268 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 65-203 |
| Cow position: | chr1:20135720-20135858 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 69-239 |
| Cow position: | chr1:72117351-72117192 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 71-250 |
| Cow position: | chr1:78885427-78885249 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 86-195 |
| Cow position: | chr1:69062426-69062536 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 89-235 |
| Cow position: | chr1:2203906-2203758 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 96-232 |
| Cow position: | chr1:90370305-90370166 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 97-242 |
| Cow position: | chr1:53568093-53568240 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 98-276 |
| Cow position: | chr1:34311333-34311514 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 100-239 |
| Cow position: | chr1:2412712-2412575 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 106-235 |
| Cow position: | chr1:22517152-22517278 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 111-248 |
| Cow position: | chr1:23625298-23625438 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 71 |
Show alignments to all cow chromosomes.