Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-248 |
| Cow position: | chr10:11276005-11276252 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 176 |
| Conread position: | 1-252 |
| Cow position: | chr10:3318216-3318471 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 1-257 |
| Cow position: | chr10:35182025-35182283 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 2-173 |
| Cow position: | chr10:15824191-15824016 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 2-197 |
| Cow position: | chr10:54342967-54342767 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 2-220 |
| Cow position: | chr10:31220501-31220722 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 79, 27 |
| Conread position: | 2-230 |
| Cow position: | chr10:18863209-18863438 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 2-232 |
| Cow position: | chr10:45195706-45195936 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 2-233 |
| Cow position: | chr10:19128467-19128221 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 36, 193 |
| Conread position: | 2-233 |
| Cow position: | chr10:21477313-21477546 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 2-233 |
| Cow position: | chr10:23879818-23879587 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 178 |
| Conread position: | 2-234 |
| Cow position: | chr10:47584032-47584258 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 2-235 |
| Cow position: | chr10:67051230-67051461 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 2-235 |
| Cow position: | chr10:68203750-68203517 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 2-237 |
| Cow position: | chr10:15618101-15617874 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 2-237 |
| Cow position: | chr10:24609120-24609362 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 2-239 |
| Cow position: | chr10:5422043-5421800 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 2-240 |
| Cow position: | chr10:767449-767214 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 125, 57 |
| Conread position: | 2-240 |
| Cow position: | chr10:16669007-16668763 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 79, 183 |
| Conread position: | 2-247 |
| Cow position: | chr10:37665250-37665002 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 182 |
| Conread position: | 2-247 |
| Cow position: | chr10:52131904-52132149 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 3-164 |
| Cow position: | chr10:48193358-48193192 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 3-177 |
| Cow position: | chr10:17415552-17415376 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 66, 118 |
| Conread position: | 3-210 |
| Cow position: | chr10:28565791-28565593 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 3-210 |
| Cow position: | chr10:60243958-60244164 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 3-233 |
| Cow position: | chr10:37428347-37428114 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 3-237 |
| Cow position: | chr10:57404332-57404112 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 125, 5 |
| Conread position: | 3-247 |
| Cow position: | chr10:12199349-12199604 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 66, 176 |
| Conread position: | 3-270 |
| Cow position: | chr10:43060754-43060489 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 4-162 |
| Cow position: | chr10:23589791-23589635 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 78 |
| Conread position: | 4-235 |
| Cow position: | chr10:41638130-41638366 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 70, 7 |
| Conread position: | 5-233 |
| Cow position: | chr10:3855074-3855296 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 193, 78 |
| Conread position: | 6-162 |
| Cow position: | chr10:37092746-37092583 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 10-156 |
| Cow position: | chr10:3536324-3536180 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 10-235 |
| Cow position: | chr10:17745459-17745679 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 14-164 |
| Cow position: | chr10:4994081-4993924 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 14-239 |
| Cow position: | chr10:48208302-48208081 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 112, 68 |
| Conread position: | 26-177 |
| Cow position: | chr10:49280156-49279997 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 35-239 |
| Cow position: | chr10:4013656-4013860 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 36-238 |
| Cow position: | chr10:62629705-62629905 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 41-235 |
| Cow position: | chr10:25536404-25536608 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 50-234 |
| Cow position: | chr10:30320800-30320983 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 57-235 |
| Cow position: | chr10:25008814-25008633 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 60-232 |
| Cow position: | chr10:22859779-22859599 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 129 |
| Conread position: | 64-232 |
| Cow position: | chr10:4605554-4605380 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 74-234 |
| Cow position: | chr10:55874156-55874314 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 78-234 |
| Cow position: | chr10:30708724-30708567 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 91-221 |
| Cow position: | chr10:30358051-30357919 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 105-245 |
| Cow position: | chr10:46010272-46010130 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 69 |
| Conread position: | 107-238 |
| Cow position: | chr10:27224172-27224303 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 91, 72 |
| Conread position: | 112-235 |
| Cow position: | chr10:45651173-45651298 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 70 |
Show alignments to all cow chromosomes.