Cow genome map

Conread name: Ss1.1-Pig4-TMW8047C15.3

Conread position: 1-202
Cow position: chr11:57153317-57153110 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 28, 39

Conread position: 1-221
Cow position: chr11:69491764-69491979 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 126, 13

Conread position: 1-233
Cow position: chr11:35284448-35284670 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 72, 33

Conread position: 1-234
Cow position: chr11:27817169-27816937 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 73, 22

Conread position: 1-234
Cow position: chr11:77763166-77762939 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 42

Conread position: 1-237
Cow position: chr11:57753033-57752793 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 66, 122

Conread position: 1-237
Cow position: chr11:77772344-77772116 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 128, 41

Conread position: 1-242
Cow position: chr11:44064227-44064476 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 188

Conread position: 1-246
Cow position: chr11:64101392-64101645 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 67, 188

Conread position: 2-158
Cow position: chr11:60511732-60511566 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 2-158
Cow position: chr11:80269499-80269345 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 126, 72

Conread position: 2-158
Cow position: chr11:84729284-84729445 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 2-166
Cow position: chr11:57062211-57062377 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 125, 80

Conread position: 2-170
Cow position: chr11:35251639-35251476 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 2-170
Cow position: chr11:70605727-70605898 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 124, 0

Conread position: 2-170
Cow position: chr11:77756415-77756237 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 2-196
Cow position: chr11:11109760-11109559 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 66, 176

Conread position: 2-198
Cow position: chr11:10877600-10877797 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 79, 180

Conread position: 2-205
Cow position: chr11:77477908-77477722 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 127, 52

Conread position: 2-205
Cow position: chr11:77478582-77478396 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 127, 52

Conread position: 2-232
Cow position: chr11:9144583-9144372 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 62, 40

Conread position: 2-232
Cow position: chr11:15885646-15885874 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 75, 29

Conread position: 2-233
Cow position: chr11:24008443-24008675 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 178

Conread position: 2-234
Cow position: chr11:29785462-29785691 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 185
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 81, 52

Conread position: 2-234
Cow position: chr11:74171263-74171036 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 24

Conread position: 2-235
Cow position: chr11:19567387-19567612 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 72, 32

Conread position: 2-235
Cow position: chr11:21909788-21909550 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 67, 29

Conread position: 2-235
Cow position: chr11:55283182-55282931 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 192

Conread position: 2-237
Cow position: chr11:82529205-82529462 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 2-238
Cow position: chr11:39830876-39830651 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 74, 101

Conread position: 2-240
Cow position: chr11:87168425-87168198 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 196, 41

Conread position: 2-242
Cow position: chr11:25807390-25807146 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 182

Conread position: 2-245
Cow position: chr11:54204476-54204233 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 127, 11

Conread position: 2-248
Cow position: chr11:8087810-8087562 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 126, 53

Conread position: 2-248
Cow position: chr11:18452795-18452558 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 196, 37

Conread position: 2-248
Cow position: chr11:22851387-22851635 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 119

Conread position: 2-253
Cow position: chr11:18153899-18153650 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 78

Conread position: 3-188
Cow position: chr11:9192791-9192605 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 84

Conread position: 3-192
Cow position: chr11:77713308-77713121 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 39

Conread position: 3-234
Cow position: chr11:12065058-12065273 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 66, 39

Conread position: 3-236
Cow position: chr11:43855882-43855646 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 65, 8

Conread position: 3-239
Cow position: chr11:1774541-1774297 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 52

Conread position: 3-248
Cow position: chr11:34303816-34304059 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 123, 92

Conread position: 4-209
Cow position: chr11:58793656-58793449 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 27

Conread position: 4-215
Cow position: chr11:12791124-12791327 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 57

Conread position: 4-249
Cow position: chr11:55119817-55120065 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 179

Conread position: 5-227
Cow position: chr11:18090489-18090715 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 63, 169

Conread position: 6-188
Cow position: chr11:40574421-40574237 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 79, 177

Conread position: 7-227
Cow position: chr11:34397830-34398055 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 85, 178

Conread position: 12-233
Cow position: chr11:5221070-5220855 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 117, 37

Conread position: 14-174
Cow position: chr11:47347002-47347163 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 112, 60

Conread position: 17-227
Cow position: chr11:34265790-34265998 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 109, 81

Conread position: 17-250
Cow position: chr11:30660648-30660890 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 52, 173

Conread position: 20-235
Cow position: chr11:65777396-65777185 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 65

Conread position: 21-194
Cow position: chr11:27610794-27610970 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 137

Conread position: 21-279
Cow position: chr11:38009643-38009388 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 108, 23

Conread position: 43-233
Cow position: chr11:25972555-25972364 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 84, 39

Conread position: 55-245
Cow position: chr11:15374182-15374371 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 51

Conread position: 68-235
Cow position: chr11:53270690-53270528 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 62

Conread position: 68-240
Cow position: chr11:16363982-16363804 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 152
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 16, 119

Conread position: 68-249
Cow position: chr11:3261127-3261307 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 130, 35

Conread position: 73-220
Cow position: chr11:462688-462838 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 11, 110

Conread position: 74-234
Cow position: chr11:34024961-34025114 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 124, 55

Conread position: 82-232
Cow position: chr11:22386604-22386766 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 22

Conread position: 83-249
Cow position: chr11:80780553-80780720 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 46, 95

Conread position: 87-234
Cow position: chr11:20998570-20998726 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 91-239
Cow position: chr11:53331219-53331370 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 39, 92

Show alignments to all cow chromosomes.