Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-234 |
| Cow position: | chr13:44144034-44143802 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 1-251 |
| Cow position: | chr13:11778239-11778464 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 2-158 |
| Cow position: | chr13:18596992-18596832 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 81, 119 |
| Conread position: | 2-163 |
| Cow position: | chr13:9103245-9103082 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 125, 80 |
| Conread position: | 2-166 |
| Cow position: | chr13:34931625-34931790 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 2-175 |
| Cow position: | chr13:17169567-17169739 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 2-186 |
| Cow position: | chr13:25955255-25955064 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 186 |
| Conread position: | 2-188 |
| Cow position: | chr13:47325520-47325339 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 125, 80 |
| Conread position: | 2-196 |
| Cow position: | chr13:51241095-51241295 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 82, 185 |
| Conread position: | 2-202 |
| Cow position: | chr13:51142639-51142445 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 2-207 |
| Cow position: | chr13:28605786-28605997 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 70, 175 |
| Conread position: | 2-221 |
| Cow position: | chr13:38535021-38534808 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 2-225 |
| Cow position: | chr13:33239888-33240114 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 2-230 |
| Cow position: | chr13:19015098-19014865 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 121 |
| Conread position: | 2-233 |
| Cow position: | chr13:19115784-19116010 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 2-233 |
| Cow position: | chr13:26034520-26034296 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 2-234 |
| Cow position: | chr13:38361925-38361689 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 2-235 |
| Cow position: | chr13:10854645-10854412 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 2-235 |
| Cow position: | chr13:34264725-34264501 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 125, 52 |
| Conread position: | 2-235 |
| Cow position: | chr13:48580616-48580384 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 52 |
| Conread position: | 2-236 |
| Cow position: | chr13:12325467-12325693 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 2-241 |
| Cow position: | chr13:22193781-22194021 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 2-242 |
| Cow position: | chr13:17597145-17597380 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 2-247 |
| Cow position: | chr13:24404003-24403754 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 2-247 |
| Cow position: | chr13:43385166-43385411 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 67 |
| Conread position: | 2-248 |
| Cow position: | chr13:12213844-12214100 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 3-219 |
| Cow position: | chr13:6921223-6921005 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 3-220 |
| Cow position: | chr13:34885348-34885573 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 185 |
| Conread position: | 3-246 |
| Cow position: | chr13:2416419-2416663 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 31 |
| Conread position: | 3-248 |
| Cow position: | chr13:4796201-4796449 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 71, 170 |
| Conread position: | 3-249 |
| Cow position: | chr13:22984824-22985071 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 199 |
| Conread position: | 4-234 |
| Cow position: | chr13:14080076-14079843 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 71, 185 |
| Conread position: | 5-180 |
| Cow position: | chr13:27844040-27843873 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 5-240 |
| Cow position: | chr13:25877493-25877718 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 5-247 |
| Cow position: | chr13:59997425-59997175 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 7-230 |
| Cow position: | chr13:18839444-18839668 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 8-248 |
| Cow position: | chr13:55407039-55407283 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 178 |
| Conread position: | 11-244 |
| Cow position: | chr13:698756-698990 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 12-190 |
| Cow position: | chr13:12658086-12658266 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 163 |
| Conread position: | 12-250 |
| Cow position: | chr13:14708748-14708992 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 13-232 |
| Cow position: | chr13:18541341-18541557 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 14-232 |
| Cow position: | chr13:11223046-11222830 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 14-235 |
| Cow position: | chr13:62271516-62271308 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 117, 22 |
| Conread position: | 20-167 |
| Cow position: | chr13:46464434-46464282 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 20-231 |
| Cow position: | chr13:4659681-4659466 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 23-237 |
| Cow position: | chr13:37498095-37498312 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 38-232 |
| Cow position: | chr13:15489927-15490127 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 148 |
| Conread position: | 43-235 |
| Cow position: | chr13:57746253-57746458 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 150 |
| Conread position: | 51-234 |
| Cow position: | chr13:20876670-20876480 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 60-233 |
| Cow position: | chr13:27795827-27796003 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 121 |
| Conread position: | 65-236 |
| Cow position: | chr13:1364284-1364116 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 79-235 |
| Cow position: | chr13:51177602-51177760 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 103 |
| Conread position: | 105-235 |
| Cow position: | chr13:33503017-33503146 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 113-235 |
| Cow position: | chr13:20496476-20496352 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 59 |
Show alignments to all cow chromosomes.