Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-250 |
| Cow position: | chr16:23878704-23878975 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-135 |
| Cow position: | chr16:608524-608392 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 124 |
| Conread position: | 2-195 |
| Cow position: | chr16:14423263-14423460 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 2-212 |
| Cow position: | chr16:15509291-15509505 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 182 |
| Conread position: | 2-220 |
| Cow position: | chr16:37441549-37441331 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 129, 107 |
| Conread position: | 2-220 |
| Cow position: | chr16:37508445-37508663 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 2-230 |
| Cow position: | chr16:45057769-45058002 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 2-232 |
| Cow position: | chr16:43850471-43850234 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 66, 185 |
| Conread position: | 2-233 |
| Cow position: | chr16:2722687-2722448 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 2-234 |
| Cow position: | chr16:4854604-4854378 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 196, 40 |
| Conread position: | 2-234 |
| Cow position: | chr16:48894461-48894229 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 2-241 |
| Cow position: | chr16:47781655-47781907 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 181 |
| Conread position: | 2-247 |
| Cow position: | chr16:12243184-12242940 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 2-247 |
| Cow position: | chr16:32352477-32352724 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 2-248 |
| Cow position: | chr16:13044207-13044458 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 36, 182 |
| Conread position: | 2-248 |
| Cow position: | chr16:14799377-14799130 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 150 |
| Conread position: | 2-257 |
| Cow position: | chr16:30572268-30572007 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 178 |
| Conread position: | 2-261 |
| Cow position: | chr16:30109469-30109208 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 2-274 |
| Cow position: | chr16:56373516-56373250 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 3-233 |
| Cow position: | chr16:41680401-41680166 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 180 |
| Conread position: | 4-236 |
| Cow position: | chr16:43850152-43849921 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 6-240 |
| Cow position: | chr16:14444542-14444775 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 10-234 |
| Cow position: | chr16:24038462-24038694 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 58, 170 |
| Conread position: | 11-234 |
| Cow position: | chr16:53547243-53547021 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 11-262 |
| Cow position: | chr16:14084781-14084524 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 165 |
| Conread position: | 14-235 |
| Cow position: | chr16:31374536-31374308 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 15-153 |
| Cow position: | chr16:29204515-29204372 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 15-232 |
| Cow position: | chr16:52813546-52813340 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 75 |
| Conread position: | 23-242 |
| Cow position: | chr16:17219069-17218858 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 122, 65 |
| Conread position: | 24-233 |
| Cow position: | chr16:22785656-22785449 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 41-230 |
| Cow position: | chr16:16622448-16622269 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 157, 13 |
| Conread position: | 42-237 |
| Cow position: | chr16:19445999-19446191 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 156, 62 |
| Conread position: | 70-230 |
| Cow position: | chr16:4295098-4294938 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 70-248 |
| Cow position: | chr16:53516222-53516035 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 74-221 |
| Cow position: | chr16:24635106-24634958 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 87-250 |
| Cow position: | chr16:37024803-37024641 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 62 |
| Conread position: | 91-223 |
| Cow position: | chr16:38397886-38397751 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 91-232 |
| Cow position: | chr16:27075611-27075755 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 91-235 |
| Cow position: | chr16:10198441-10198588 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 126-248 |
| Cow position: | chr16:14824492-14824372 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 137-235 |
| Cow position: | chr16:7086281-7086184 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 43 |
Show alignments to all cow chromosomes.