Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-221 |
| Cow position: | chr18:50242387-50242609 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 1-250 |
| Cow position: | chr18:24664115-24663868 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 2-147 |
| Cow position: | chr18:23316445-23316294 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 2-233 |
| Cow position: | chr18:1700919-1701146 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 2-234 |
| Cow position: | chr18:50880812-50881052 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 2-235 |
| Cow position: | chr18:21123193-21122965 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 2-235 |
| Cow position: | chr18:25846704-25846471 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 2-235 |
| Cow position: | chr18:49436680-49436917 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 78, 182 |
| Conread position: | 2-236 |
| Cow position: | chr18:22433459-22433221 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 199 |
| Conread position: | 2-236 |
| Cow position: | chr18:27405219-27405451 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 2-238 |
| Cow position: | chr18:16259592-16259834 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 184 |
| Conread position: | 2-238 |
| Cow position: | chr18:32860978-32861220 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 183 |
| Conread position: | 2-242 |
| Cow position: | chr18:53047726-53047485 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 72, 177 |
| Conread position: | 3-231 |
| Cow position: | chr18:29081345-29081573 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 132 |
| Conread position: | 4-234 |
| Cow position: | chr18:39474944-39474702 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 188 |
| Conread position: | 4-256 |
| Cow position: | chr18:28085905-28086166 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 64, 157 |
| Conread position: | 5-209 |
| Cow position: | chr18:51331922-51332133 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 9-167 |
| Cow position: | chr18:8170755-8170922 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 10-235 |
| Cow position: | chr18:1129238-1129459 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 13-203 |
| Cow position: | chr18:5060199-5060002 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 82, 167 |
| Conread position: | 21-174 |
| Cow position: | chr18:29225026-29225184 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 23-235 |
| Cow position: | chr18:32371761-32371558 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 108, 51 |
| Conread position: | 25-245 |
| Cow position: | chr18:52870961-52871184 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 45, 158 |
| Conread position: | 36-225 |
| Cow position: | chr18:36456400-36456594 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 161 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 82-220 |
| Cow position: | chr18:26667692-26667826 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 98-234 |
| Cow position: | chr18:35471136-35470999 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 99-232 |
| Cow position: | chr18:56125269-56125135 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 99-248 |
| Cow position: | chr18:32286651-32286800 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 99, 50 |
| Conread position: | 126-234 |
| Cow position: | chr18:23503383-23503278 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 45 |
Show alignments to all cow chromosomes.