Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-231 |
| Cow position: | chr2:41491004-41491237 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 80, 184 |
| Conread position: | 1-232 |
| Cow position: | chr2:63287783-63287558 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 126, 72 |
| Conread position: | 2-156 |
| Cow position: | chr2:20281859-20282017 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 2-173 |
| Cow position: | chr2:18249243-18249076 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 128, 72 |
| Conread position: | 2-173 |
| Cow position: | chr2:38583559-38583379 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 56 |
| Conread position: | 2-186 |
| Cow position: | chr2:44983307-44983117 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 185 |
| Conread position: | 2-188 |
| Cow position: | chr2:3730473-3730660 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 2-208 |
| Cow position: | chr2:33823255-33823061 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 129, 36 |
| Conread position: | 2-219 |
| Cow position: | chr2:53716620-53716406 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 78, 149 |
| Conread position: | 2-221 |
| Cow position: | chr2:19480712-19480927 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 125, 39 |
| Conread position: | 2-221 |
| Cow position: | chr2:40370401-40370193 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 2-227 |
| Cow position: | chr2:39196406-39196195 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 196, 15 |
| Conread position: | 2-230 |
| Cow position: | chr2:19750693-19750925 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 2-231 |
| Cow position: | chr2:43344924-43344690 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 2-232 |
| Cow position: | chr2:5767681-5767456 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 2-232 |
| Cow position: | chr2:49441194-49441426 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 116 |
| Conread position: | 2-232 |
| Cow position: | chr2:52183317-52183545 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 66 |
| Conread position: | 2-233 |
| Cow position: | chr2:12777206-12776979 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 52 |
| Conread position: | 2-233 |
| Cow position: | chr2:31420359-31420599 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 91, 173 |
| Conread position: | 2-234 |
| Cow position: | chr2:7779111-7778888 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 2-234 |
| Cow position: | chr2:33791116-33790883 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 2-235 |
| Cow position: | chr2:3544234-3543999 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 125, 40 |
| Conread position: | 2-235 |
| Cow position: | chr2:21697353-21697126 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 196, 41 |
| Conread position: | 2-235 |
| Cow position: | chr2:46130569-46130331 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 2-237 |
| Cow position: | chr2:13684963-13685192 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 2-237 |
| Cow position: | chr2:52347407-52347174 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 80 |
| Conread position: | 2-239 |
| Cow position: | chr2:11736773-11737004 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 2-239 |
| Cow position: | chr2:62463633-62463388 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 66, 186 |
| Conread position: | 2-242 |
| Cow position: | chr2:14037353-14037117 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 2-242 |
| Cow position: | chr2:15273516-15273282 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 125, 40 |
| Conread position: | 2-242 |
| Cow position: | chr2:82828010-82827772 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 2-245 |
| Cow position: | chr2:47746592-47746830 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 2-247 |
| Cow position: | chr2:23062555-23062310 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 178 |
| Conread position: | 2-272 |
| Cow position: | chr2:41417867-41417601 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 3-195 |
| Cow position: | chr2:80603965-80603768 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 183 |
| Conread position: | 3-242 |
| Cow position: | chr2:3182155-3181908 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 160 |
| Conread position: | 4-209 |
| Cow position: | chr2:19130522-19130722 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 194, 27 |
| Conread position: | 6-247 |
| Cow position: | chr2:9709831-9710076 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 81, 177 |
| Conread position: | 6-253 |
| Cow position: | chr2:7212165-7212411 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 192, 128 |
| Conread position: | 7-237 |
| Cow position: | chr2:38805983-38805748 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 60, 177 |
| Conread position: | 7-246 |
| Cow position: | chr2:18274297-18274055 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 69, 178 |
| Conread position: | 9-235 |
| Cow position: | chr2:51826792-51826574 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 10-248 |
| Cow position: | chr2:7365851-7365610 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 169 |
| Conread position: | 13-196 |
| Cow position: | chr2:39412029-39412208 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 20-249 |
| Cow position: | chr2:56822951-56822719 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 24-240 |
| Cow position: | chr2:74387748-74387521 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 16, 166 |
| Conread position: | 36-249 |
| Cow position: | chr2:53280773-53280995 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 41-235 |
| Cow position: | chr2:20534227-20534028 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 46, 145 |
| Conread position: | 42-235 |
| Cow position: | chr2:13048609-13048807 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 42-235 |
| Cow position: | chr2:73205032-73204832 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 145 |
| Conread position: | 55-234 |
| Cow position: | chr2:18759895-18760082 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 58-234 |
| Cow position: | chr2:68962682-68962511 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 68-252 |
| Cow position: | chr2:16522030-16522217 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 71-234 |
| Cow position: | chr2:72599250-72599414 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 74-228 |
| Cow position: | chr2:69982792-69982949 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 74-240 |
| Cow position: | chr2:12910626-12910794 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 108 |
| Conread position: | 77-235 |
| Cow position: | chr2:59592564-59592405 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 82-235 |
| Cow position: | chr2:36213906-36213752 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 91-246 |
| Cow position: | chr2:71121693-71121848 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 96-234 |
| Cow position: | chr2:37155547-37155409 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 99-232 |
| Cow position: | chr2:6837080-6836939 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.