Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-195 |
| Cow position: | chr28:6355444-6355634 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 2-135 |
| Cow position: | chr28:17482578-17482449 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 2-233 |
| Cow position: | chr28:8172876-8172661 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 127, 52 |
| Conread position: | 2-235 |
| Cow position: | chr28:28630945-28631166 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 66 |
| Conread position: | 2-235 |
| Cow position: | chr28:31994283-31994029 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 72, 236 |
| Conread position: | 2-237 |
| Cow position: | chr28:34346889-34346650 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 66, 147 |
| Conread position: | 2-248 |
| Cow position: | chr28:15349830-15350071 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 198, 29 |
| Conread position: | 2-256 |
| Cow position: | chr28:34117459-34117717 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 37, 159 |
| Conread position: | 3-175 |
| Cow position: | chr28:32284627-32284453 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 3-179 |
| Cow position: | chr28:24468419-24468596 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 3-233 |
| Cow position: | chr28:2340914-2341139 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 3-247 |
| Cow position: | chr28:16251887-16251645 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 44, 58 |
| Conread position: | 3-247 |
| Cow position: | chr28:26626806-26626575 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 5-234 |
| Cow position: | chr28:4803095-4802868 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 6-163 |
| Cow position: | chr28:3898416-3898581 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 6-237 |
| Cow position: | chr28:5912473-5912237 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 180 |
| Conread position: | 11-161 |
| Cow position: | chr28:6277146-6276991 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 75, 141 |
| Conread position: | 12-256 |
| Cow position: | chr28:6103091-6103336 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 23-251 |
| Cow position: | chr28:25926709-25926942 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 160 |
| Conread position: | 31-233 |
| Cow position: | chr28:22614295-22614496 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 38-234 |
| Cow position: | chr28:22361031-22361229 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 65-235 |
| Cow position: | chr28:11379273-11379103 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 87-241 |
| Cow position: | chr28:7592642-7592800 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 96-245 |
| Cow position: | chr28:16804807-16804655 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 96-245 |
| Cow position: | chr28:27890322-27890170 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 98-235 |
| Cow position: | chr28:11284067-11283927 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 105-237 |
| Cow position: | chr28:22831055-22831188 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 106-235 |
| Cow position: | chr28:12384495-12384625 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 106-259 |
| Cow position: | chr28:16241225-16241073 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 128-235 |
| Cow position: | chr28:34338254-34338360 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 51 |
Show alignments to all cow chromosomes.