Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-233 |
| Cow position: | chr29:8890897-8890665 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 1-242 |
| Cow position: | chr29:34392162-34392411 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 2-143 |
| Cow position: | chr29:2848054-2847910 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 2-201 |
| Cow position: | chr29:19931697-19931896 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 123 |
| Conread position: | 2-225 |
| Cow position: | chr29:22655571-22655354 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 125, 29 |
| Conread position: | 2-231 |
| Cow position: | chr29:8906890-8907117 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 2-233 |
| Cow position: | chr29:7738330-7738098 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 127, 65 |
| Conread position: | 2-234 |
| Cow position: | chr29:35037101-35037327 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 2-235 |
| Cow position: | chr29:3346331-3346556 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 196, 73 |
| Conread position: | 2-236 |
| Cow position: | chr29:12193529-12193759 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 2-237 |
| Cow position: | chr29:682168-681941 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 126, 39 |
| Conread position: | 2-242 |
| Cow position: | chr29:2480988-2480746 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 66, 178 |
| Conread position: | 2-242 |
| Cow position: | chr29:16359991-16360225 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 125, 72 |
| Conread position: | 3-144 |
| Cow position: | chr29:5174353-5174498 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-234 |
| Cow position: | chr29:18338171-18337953 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 5-235 |
| Cow position: | chr29:34330875-34330629 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 184 |
| Conread position: | 7-234 |
| Cow position: | chr29:44028164-44028389 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 47 |
| Conread position: | 8-270 |
| Cow position: | chr29:23988864-23989132 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 68, 176 |
| Conread position: | 10-255 |
| Cow position: | chr29:794967-795215 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 13-234 |
| Cow position: | chr29:7892586-7892362 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 68, 169 |
| Conread position: | 15-235 |
| Cow position: | chr29:18361309-18361093 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 16-207 |
| Cow position: | chr29:8685372-8685565 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 158 |
| Conread position: | 16-234 |
| Cow position: | chr29:849453-849678 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 173 |
| Conread position: | 17-234 |
| Cow position: | chr29:1711421-1711636 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 25-241 |
| Cow position: | chr29:30581186-30581409 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 165 |
| Conread position: | 33-234 |
| Cow position: | chr29:30814075-30814277 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 76 |
| Conread position: | 36-231 |
| Cow position: | chr29:19252664-19252861 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 147 |
| Conread position: | 61-227 |
| Cow position: | chr29:30920956-30920789 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 74-230 |
| Cow position: | chr29:28115597-28115750 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 76-252 |
| Cow position: | chr29:40091684-40091506 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 82-221 |
| Cow position: | chr29:13653901-13654039 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 97 |
| Conread position: | 107-253 |
| Cow position: | chr29:38333945-38334095 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 126-256 |
| Cow position: | chr29:42269683-42269814 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 53 |
Show alignments to all cow chromosomes.